Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30475.Seq
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        101   9e-22
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.7  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        28   9.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  101 bits (241), Expect = 9e-22
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +2

Query: 80  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 47/85 (55%), Positives = 56/85 (65%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTSGGCRKQ 689
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+       S          GGCRKQ
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEV-GYDDIGGCRKQ 166

Query: 690 LGAKLKEMVGVATAVILSMVXRLFE 764
           L A++KE  G     I+S +  L +
Sbjct: 167 L-AQIKETHGEVERRIVSQLLTLMD 190



 Score = 31.9 bits (69), Expect = 0.60
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 255 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 307

Query: 401 S 399
           +
Sbjct: 308 N 308


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 578 HDAKW*WICFDHFELDGAHAPADLKVSSRWIGR*ASMKYGFKYTSNRLP-VRPSTESSIG 402
           H   W  IC+DH++L  AH      V+ R +G  A +K   K T + LP V     S +G
Sbjct: 318 HAGAWGLICYDHWDLHDAH------VACRQVGL-AGVKAVTKETVDGLPRVHLGNVSCVG 370

Query: 401 S 399
           +
Sbjct: 371 N 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,235,991
Number of Sequences: 59808
Number of extensions: 542300
Number of successful extensions: 1355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)