BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30475.Seq (777 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 123 2e-28 Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 113 1e-25 Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 113 1e-25 AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 4.9 Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 8.6 AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 8.6 >Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical protein C06A1.1 protein. Length = 809 Score = 123 bits (296), Expect = 2e-28 Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Frame = +1 Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402 + +G+ + + I++SD++CP+EK+RM DVVSI P P++ YG R+H+L Sbjct: 64 ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123 Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582 PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F A K + + + Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVET--EPAPACI 181 Query: 583 LIP*YTVTV--NRFKREEEEEALNAVG 657 + P + + KREEEEE++N +G Sbjct: 182 VSPDTMIHYEGDPIKREEEEESMNDIG 208 Score = 90.6 bits (215), Expect = 1e-18 Identities = 42/63 (66%), Positives = 55/63 (87%) Frame = +2 Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250 K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72 Query: 251 TVA 259 +VA Sbjct: 73 SVA 75 Score = 64.1 bits (149), Expect = 1e-10 Identities = 36/69 (52%), Positives = 45/69 (65%) Frame = +3 Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTSGGCRKQ 689 V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PI S GG RKQ Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDI-GYDDLGGVRKQ 218 Query: 690 LGAKLKEMV 716 L A++KEMV Sbjct: 219 L-AQIKEMV 226 >Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical protein C41C4.8 protein. Length = 810 Score = 113 bits (273), Expect = 1e-25 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 3/148 (2%) Frame = +1 Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402 + +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122 Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582 PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179 Query: 583 LIP*YTV---TVNRFKREEEEEALNAVG 657 ++ TV + KREEEEEALN VG Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVG 207 Score = 89.0 bits (211), Expect = 3e-18 Identities = 40/63 (63%), Positives = 56/63 (88%) Frame = +2 Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250 K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72 Query: 251 TVA 259 TV+ Sbjct: 73 TVS 75 Score = 67.7 bits (158), Expect = 9e-12 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Frame = +3 Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS--GGCR 683 V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PI R + + GG R Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPI---KREEEEEALNEVGYDDLGGVR 215 Query: 684 KQLGAKLKEMV 716 KQL A++KEMV Sbjct: 216 KQL-AQIKEMV 225 >Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical protein C41C4.8 protein. Length = 810 Score = 113 bits (273), Expect = 1e-25 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 3/148 (2%) Frame = +1 Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402 + +G+ + IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+L Sbjct: 64 ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122 Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582 PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F A K + A Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179 Query: 583 LIP*YTV---TVNRFKREEEEEALNAVG 657 ++ TV + KREEEEEALN VG Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVG 207 Score = 89.0 bits (211), Expect = 3e-18 Identities = 40/63 (63%), Positives = 56/63 (88%) Frame = +2 Query: 71 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250 K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72 Query: 251 TVA 259 TV+ Sbjct: 73 TVS 75 Score = 67.7 bits (158), Expect = 9e-12 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Frame = +3 Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS--GGCR 683 V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PI R + + GG R Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPI---KREEEEEALNEVGYDDLGGVR 215 Query: 684 KQLGAKLKEMV 716 KQL A++KEMV Sbjct: 216 KQL-AQIKEMV 225 >AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical protein Y39F10A.3 protein. Length = 309 Score = 28.7 bits (61), Expect = 4.9 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11 ++ AF++C + N+LL SK+ Y FY Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32 >Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical protein F42E11.4 protein. Length = 250 Score = 27.9 bits (59), Expect = 8.6 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +2 Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199 L K+ NK+ +DL T LR++ +++ E V+ N AK+E + Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110 >AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 protein. Length = 250 Score = 27.9 bits (59), Expect = 8.6 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +2 Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199 L K+ NK+ +DL T LR++ +++ E V+ N AK+E + Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,496,322 Number of Sequences: 27780 Number of extensions: 396942 Number of successful extensions: 955 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 863 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 950 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1872168044 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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