Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30475.Seq
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   123   2e-28
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   113   1e-25
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   113   1e-25
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   8.6  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  123 bits (296), Expect = 2e-28
 Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  + +  I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F    A      K  +       + +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVET--EPAPACI 181

Query: 583 LIP*YTVTV--NRFKREEEEEALNAVG 657
           + P   +    +  KREEEEE++N +G
Sbjct: 182 VSPDTMIHYEGDPIKREEEEESMNDIG 208



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/63 (66%), Positives = 55/63 (87%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 251 TVA 259
           +VA
Sbjct: 73  SVA 75



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTSGGCRKQ 689
           V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PI       S          GG RKQ
Sbjct: 160 VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDI-GYDDLGGVRKQ 218

Query: 690 LGAKLKEMV 716
           L A++KEMV
Sbjct: 219 L-AQIKEMV 226


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  113 bits (273), Expect = 1e-25
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A         K +    A   
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179

Query: 583 LIP*YTV---TVNRFKREEEEEALNAVG 657
           ++   TV     +  KREEEEEALN VG
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVG 207



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS--GGCR 683
           V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PI    R    +    +     GG R
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPI---KREEEEEALNEVGYDDLGGVR 215

Query: 684 KQLGAKLKEMV 716
           KQL A++KEMV
Sbjct: 216 KQL-AQIKEMV 225


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  113 bits (273), Expect = 1e-25
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A         K +    A   
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPAC 179

Query: 583 LIP*YTV---TVNRFKREEEEEALNAVG 657
           ++   TV     +  KREEEEEALN VG
Sbjct: 180 IVAPDTVIHYEGDPIKREEEEEALNEVG 207



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS--GGCR 683
           V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PI    R    +    +     GG R
Sbjct: 159 VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPI---KREEEEEALNEVGYDDLGGVR 215

Query: 684 KQLGAKLKEMV 716
           KQL A++KEMV
Sbjct: 216 KQL-AQIKEMV 225


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,496,322
Number of Sequences: 27780
Number of extensions: 396942
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)