Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30475.Seq
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   117   8e-27
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   117   8e-27
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   112   3e-25
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   1.1  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.5  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  117 bits (282), Expect = 8e-27
 Identities = 51/99 (51%), Positives = 66/99 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS-GGCRK 686
           VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+    R    +         GG RK
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPV---KREDEERLDEVGYDDVGGVRK 214

Query: 687 QLGAKLKEMV 716
           Q+ A+++E+V
Sbjct: 215 QM-AQIRELV 223


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  117 bits (282), Expect = 8e-27
 Identities = 51/99 (51%), Positives = 66/99 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F   G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67

Query: 242 RKETV 256
           RK+TV
Sbjct: 68  RKDTV 72



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS-GGCRK 686
           VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+    R    +         GG RK
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPV---KREDEERLDDVGYDDVGGVRK 214

Query: 687 QLGAKLKEMV 716
           Q+ A+++E+V
Sbjct: 215 QM-AQIRELV 223


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  112 bits (269), Expect = 3e-25
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
           P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F   G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = +2

Query: 62  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 239 RRKETV 256
           +RK+TV
Sbjct: 68  KRKDTV 73



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS-GGCRK 686
           VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPI    R    +         GG RK
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPI---KREDEERLDEVGYDDVGGVRK 215

Query: 687 QLGAKLKEMV 716
           Q+ A+++E+V
Sbjct: 216 QM-AQIRELV 224


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,663
Number of Sequences: 28952
Number of extensions: 368100
Number of successful extensions: 928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)