Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30474.Seq
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 52 6e-07
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 31 0.90
10_08_0050 + 14469879-14470072,14470620-14471094 31 1.2
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 31 1.2
01_01_0472 - 3473096-3474288,3474833-3474938 30 1.6
12_02_0625 - 21331209-21331273,21331364-21331555,21332348-213325... 29 2.8
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 29 3.6
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 29 3.6
04_04_1220 + 31843628-31844755 29 4.8
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 29 4.8
06_03_0194 + 17775189-17775482,17775793-17775844,17775934-177759... 28 6.4
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = -3
Query: 551 QLLARRRDGAELSSV--QMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+ L R GA ++++ Q+QADLLG PV+RP +E+TALGAA AG A+ VW
Sbjct: 430 EFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVW 481
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 351 GKSRQECIGRWAGYCRGPHTHCA-TCDNGRPQGCTFHHEGTNDWYTQ*ISLHLHRTEF 521
G+S EC RW + +H A T + T +G N+W ++L HRT F
Sbjct: 369 GRSGAECESRWLNFDDPLISHNAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPF 426
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 293 GWTDTKNEHVNAENQIELLQFCRRD 219
G+T T ++ N+ N E+L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -3
Query: 554 RQLLARRRDGAELSSVQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPA 375
R L RRR + L + A G P+ + AA++ G A T+ P PP+
Sbjct: 93 RSLSNRRRHSSHLFAAPRHASTAGAPIATLRYSAVLGIEAAVLVGTARD--STSSPIPPS 150
Query: 374 DTFLPAL 354
T P+L
Sbjct: 151 STGAPSL 157
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 666 LSEKXSNVSIFVRPALEAVCHQTRARGGRDGCRLRAPEATPRPTEGWRRTQFCADAG*FT 487
L+E+ NV+ +R + + G D R+P +P P + W R Q AG F
Sbjct: 83 LAERYDNVTGELRKNIPTRLQYQGSLAGSDSELQRSPSPSPEPQKSWTREQSPRAAG-FD 141
Query: 486 GYTSHSSPHDGKYSP 442
+ S+ S +G SP
Sbjct: 142 VFLSNKS--NGSPSP 154
>12_02_0625 -
21331209-21331273,21331364-21331555,21332348-21332558,
21333600-21333700,21333839-21333844,21333956-21334051,
21334485-21334497
Length = 227
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 512 SVQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVWPTTIPSPPAD 372
S +QADLLG PVIRP + AG ++ PP D
Sbjct: 38 SAHLQADLLGSPVIRPSEPLELQKQLELAAGIWIKAVDPAFGLPPVD 84
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 558 PEATPRPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHC 427
P ++P P R+ AD TG + S H PGG HC
Sbjct: 24 PPSSPPPRASADRSSAAADLDLGTGRSGEHSVHRVFLDPGGKHC 67
>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 365 GMYRPVGWVLSWATHALRDLRQWPPPGL 448
G PVGW L + T L D PPP L
Sbjct: 926 GNNNPVGWPLRFLTPVLSDENSVPPPSL 953
>04_04_1220 + 31843628-31844755
Length = 375
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 441 GGGHCRRSRNACVAHDNTQPT 379
GGGH R R +CV D+ +P+
Sbjct: 231 GGGHMRERRTSCVVVDDMEPS 251
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/92 (25%), Positives = 33/92 (35%)
Frame = -2
Query: 660 EKXSNVSIFVRPALEAVCHQTRARGGRDGCRLRAPEATPRPTEGWRRTQFCADAG*FTGY 481
+K S VS + P L++ +T +R P TP + T +AG T
Sbjct: 230 DKDSKVSCSLPPMLDSSVGKTTTDVKEPRTSIRGPAVTPNSSPDLETTFESTEAG--TSS 287
Query: 480 TSHSSPHDGKYSPGGGHCRRSRNACVAHDNTQ 385
S S P YS + + A D Q
Sbjct: 288 VSSSDPGTSPYSASDTNGSMKKEAPATKDRVQ 319
>06_03_0194 +
17775189-17775482,17775793-17775844,17775934-17775959,
17776525-17776869,17777231-17777287
Length = 257
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 573 CRLRAPEATPRPTEGWRRTQFCADAG 496
CR RAPE +GWRR C D G
Sbjct: 39 CRRRAPEGRV-VVKGWRRQGGCGDCG 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,732,651
Number of Sequences: 37544
Number of extensions: 466658
Number of successful extensions: 1303
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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