Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30474.Seq
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    46   4e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   46   4e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)           30   2.1  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             30   2.1  
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           28   8.6  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)
          Length = 145

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 609 CHQTRARGGRDGC-RLRAPE 553
           CH+TRAR G  GC R RAP+
Sbjct: 80  CHRTRARQGMTGCYRTRAPK 99


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 573 CRLRAPEATPRPTEGWRRTQF--CADAG*FT--GYTSHSSPHDGKYSPGGGHCRRSRNAC 406
           C  RAP  TP    G     +  C   G +   G +S      G+Y+PGG +  RS N C
Sbjct: 222 CYRRAPSPTPPVDTGHTPAWYGSCPTGGYYCLQGVSSPQPCPPGRYAPGGQNRIRSANEC 281


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 548 LLARRRDGAELSS---VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
           L   R DG   ++   +++ + L G  + RP   + + LGAA +AG A  VW
Sbjct: 5   LCYHRTDGGVCNNDFVMELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 363 QECIGRW--AGYCRGPHTHCATC 425
           QEC+GRW  A + RG H  C  C
Sbjct: 26  QECLGRWNVAQFFRGRHPTCPHC 48


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
           CR +   +Q  VP+  + Q WG  + +  +C    +Q    R  H  +LL  +  +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,938,430
Number of Sequences: 59808
Number of extensions: 499310
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)