Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30473.Seq
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    29   0.99 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.99 
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.0  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   4.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.2  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 701 YWRKDAQGSECAGLSRKDSTSAYCQGRAGGR 609
           +++KDA    C  ++ K  TSAY +G  G R
Sbjct: 378 FYKKDATCPHCGNMTVKKQTSAYWEGGKGMR 408


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 421 PATMAAPRAVLSIMRGRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRAS 600
           P T  AP + +S++  +   +P + +   +ELSS P+L    ++S    L P  PPR  S
Sbjct: 342 PYTHIAPASEMSLIPEKPR-LPPRPSHTLSELSS-PALTSENLSSKPSPLFPPPPPRVKS 399

Query: 601 GDTRPP 618
             T  P
Sbjct: 400 LATNKP 405


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 485 GIPVIRPLMMESTALGAAIVAGRAMRVW 402
           GIP+I P+      L  A+ + RA ++W
Sbjct: 131 GIPIIDPVTRAPAVLAGAVSSSRAKQMW 158


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 290 WTDTKNEHVNAENQIELLQFCRRDFFSSEPPY 195
           W +T+N   +  N +E+L    R+   S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +1

Query: 388 GIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICT------ELSS-APSLRRRG 546
           G++VG+T + RP T+ +   V     G ++G P K   + T       LSS  P +   G
Sbjct: 330 GVIVGNTTVQRPKTLKSTSHVEE--TGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGG 387

Query: 547 VASGARSLQPSR 582
           ++SG  +++ +R
Sbjct: 388 ISSGKDAIEYAR 399


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 553 RQLLADGGMAQNSVLCRCRLIYWVYQSFVPS*WK 452
           +++ +D   +Q +V  R  L+ W++ S  PS WK
Sbjct: 162 QRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNWK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,920
Number of Sequences: 5004
Number of extensions: 69574
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)