Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30473.Seq
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 46 5e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 46 5e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 30 1.8
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36) 29 5.6
SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08) 28 7.4
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 28 7.4
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 9.8
SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 9.8
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 649 TRRQHIVRAALEAVCHQTR-XXXXXXXXXXAPLRQLLADGGMAQNSVL 509
T R HI RA LEAVC QTR PL LL DGGM N +L
Sbjct: 388 TNRAHIARATLEAVCFQTRELLDAMNEDCGIPLASLLVDGGMTVNRLL 435
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 638 AYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDGAELSSVQMQADLLG 483
A+ GR GGR+ A R GR+G R+++ R R+G + S+ ++ G
Sbjct: 1777 AHRSGRNGGRMKSLANRSGRNGGRMKS--LAHRSMRNGGRMKSLAHRSSRKG 1826
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 644 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDG 525
T A+ R GGR+ A R R+G R+++ A P RR+ G
Sbjct: 1705 TLAHPSSRKGGRMKSLAHRSSRNGGRMKS-LAHPSRRKGG 1743
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 644 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDG 525
T A+ R GGR+ A R GR+G R++ A P R+ G
Sbjct: 1271 TLAHPSSRKGGRMKSLAHRSGRNGGRMKT-LAHPSSRKGG 1309
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 644 TSAYCQGRAGGRVSPDARRGGRDGCRLRAPEATPRRRRDG 525
T A+ R GGR+ A R GR+G R+++ A P R G
Sbjct: 1299 TLAHPSSRKGGRMKSLANRSGRNGGRMKS-LAHPSSRNGG 1337
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Frame = +1
Query: 403 HTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSS---------APSLRRRGVAS 555
H + P +A P ++S+ G ++G + + T S PS R +
Sbjct: 1637 HPSMLMPHPLAMPGLMMSMSSGMISGSNTSTTTTATSSRSRDPDSSPYRTPSDRSSPLTV 1696
Query: 556 GARSLQPSRPPRRASGDTRPPAR 624
G RS +P PPR R P R
Sbjct: 1697 GGRSSRPRSPPRLMEPRPRSPVR 1719
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 665 RHIHSPGRLFSNNGELKGH*NAGXKTNYWPSSSSPDPEL 781
+H+ +PG NG G AG K WP SPD +L
Sbjct: 1425 QHVATPGTCVHPNGGSPG---AGVKLRLWPGCQSPDNKL 1460
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -3
Query: 635 YCQGRAGGRVSPDARRGGRDGCRLRAPEATPRR 537
Y GR GGR RGGR G R A EA+P R
Sbjct: 418 YRGGRGGGRGG--GGRGGRGGLRGEASEASPNR 448
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+++ + L G + RP + + LGAA +AG A VW
Sbjct: 21 MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 363 QECIGRW--AGYCRGPHTHCATC 425
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
Length = 924
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +1
Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
GR + + + C ++AP + + G G + PS PP + T P P
Sbjct: 840 GRESTVSLRDLAPCPPQNTAPQMSQEGTFQGQAAPTPSTPPTDSGLKTPAPILP 893
>SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)
Length = 757
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 618 SAALTIC*RRVLSAQTGTFTPLGVFSPIMAN*KAIKMQVXKLI 746
+A + + R L + PLG+ SPIM +A+K V + +
Sbjct: 299 AAGVNVTKRNTLKVMASMYDPLGIVSPIMGR-QAVKKSVSECV 340
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 508 TELSSAPSLRRRGVASGARSLQPSRPP 588
T L++ PS R+ G +S A++ +PS PP
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPP 3182
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 527 HPSVGEELPQGRAVCSHRVRHGARLVTHGLQRGPDNM---LTSSPFGSNR-HIHSPGRLF 694
HP + L V SHR+ H R VTH ++ + L S+ S+R +H P R+F
Sbjct: 1 HPYLRRHLVSYLMVSSHRLLHRQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPCRIF 60
Query: 695 SNNGEL 712
L
Sbjct: 61 EGFARL 66
>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
Length = 538
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 543 SPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHD 394
SP G+R T F G T + +S H + S G RNACV+ D
Sbjct: 484 SPYLGFRSTSF-TPLG--TAFAYMASVHTRRTSSRGNRLNMRRNACVSQD 530
>SB_14677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 466 GRMTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
GR + + + C ++AP + + G G + P+ PP + T P P
Sbjct: 244 GRESTVSLRDLASCPPQNTAPQMSQEGTFQGQAAPTPTTPPTDSGLKTPAPILP 297
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,013,640
Number of Sequences: 59808
Number of extensions: 598164
Number of successful extensions: 1619
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -