Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30473.Seq
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   8.6  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   8.6  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -3

Query: 626 GRAGGRVSPDARRGGRDGCRLRAP--EATPRR---RRD 528
           G  GG  SP ARRGG  G R R+P    +PRR   RRD
Sbjct: 193 GGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRD 230



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 695 RKDAQGSECAGLSRKDSTSAYCQGRAGG--RVSPDARRGGRDGCRLRAPEATPRRRRDGA 522
           R+   GS+     R+ S +A  + R     R SP  RR      R R+P   PRR R  +
Sbjct: 467 RRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPRQDS 526

Query: 521 E 519
           E
Sbjct: 527 E 527



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 535 RRRGVASGARSLQPSRPPRRASGDTRPPA 621
           RRR  +S +RS  P  PPRR   D+   A
Sbjct: 502 RRRSPSSSSRSRSPPPPPRRPRQDSEQQA 530


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
           protein C05D12.3c protein.
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
           protein C05D12.3a protein.
          Length = 1039

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 734 YLHFNGLLIRHYWRKDAQGSECAGLS 657
           ++HF+GL++  ++  DAQ S C G S
Sbjct: 7   FIHFSGLILLMFYLVDAQFSPCNGKS 32


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 642  RRVLSAQTGTFTPLGVFSPIMAN*KAIKMQV 734
            R V S    TF PLG+ +PI+ + K +  Q+
Sbjct: 1359 REVASKMAATFDPLGLVTPIIVHFKLLIQQI 1389


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 698 WRKDAQGSECAGLSRKDSTSAYCQ 627
           W+KD + SE A +SR+ S   YC+
Sbjct: 542 WKKDEKDSEHAVVSRRPSFRIYCE 565


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 506 QMQADLLGIPVIRPLMMESTALGAAIVAG 420
           ++QAD++G  ++ P + E +  GAA+  G
Sbjct: 425 EIQADIMGRDIVTPKITEISGWGAAVAGG 453


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 487 SKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 624
           S S+   +  S + S   R  +S +     SR PRR   DTRPPAR
Sbjct: 17  SSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRR--DTRPPAR 60


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 642  RRVLSAQTGTFTPLGVFSPIMAN*KAIKMQV 734
            R V S    TF PLG+ +PI+ + K +  Q+
Sbjct: 1359 REVASKMAATFDPLGLVTPIIVHFKLLIQQI 1389


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 520 SAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARP 627
           S    R  G  +G+ S   S  P RASG   PPA P
Sbjct: 113 SGTGQRLSGSTTGSSSSTSSSAPPRASGAAPPPAGP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,651
Number of Sequences: 27780
Number of extensions: 429548
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)