Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30472.Seq
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...   109   2e-24
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...   109   2e-24
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    30   1.5  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    30   1.5  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    29   2.6  
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ...    29   3.4  
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote...    29   3.4  
At5g25265.1 68418.m02995 expressed protein                             29   4.5  
At3g08670.1 68416.m01007 expressed protein                             29   4.5  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    28   6.0  
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat...    28   6.0  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    28   6.0  
At1g27960.1 68414.m03425 expressed protein contains Pfam profile...    28   6.0  
At3g05370.1 68416.m00586 disease resistance family protein conta...    28   7.9  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  109 bits (263), Expect = 2e-24
 Identities = 66/174 (37%), Positives = 93/174 (53%)
 Frame = +1

Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
           +V+  E +  G +   V   +  +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITG**KSYTKEESSY 546
             TA AMGG++ F+EAL  RL + +P++ ++ E+++K P RL+PGI    K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 547 I*FRADSGV**NRSRRD*TFPTINIFANRLKFYFNGEYAGLR*KRANIRRSGGQ 708
                      N        P  NIFAN L F  +GE+ G   +     RSGG+
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFD-ENEPTSRSGGK 227



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIP 608
           LVK+L    + VYL+SGGFR +I PVA  L IP
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIP 195


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score =  109 bits (263), Expect = 2e-24
 Identities = 66/174 (37%), Positives = 93/174 (53%)
 Frame = +1

Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
           +V+  E +  G +   V   +  +L+R+ + VCFDVDSTV  DEGIDELA+FCG G  V 
Sbjct: 55  SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114

Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITG**KSYTKEESSY 546
             TA AMGG++ F+EAL  RL + +P++ ++ E+++K P RL+PGI    K         
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDV 174

Query: 547 I*FRADSGV**NRSRRD*TFPTINIFANRLKFYFNGEYAGLR*KRANIRRSGGQ 708
                      N        P  NIFAN L F  +GE+ G   +     RSGG+
Sbjct: 175 YLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFD-ENEPTSRSGGK 227



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIP 608
           LVK+L    + VYL+SGGFR +I PVA  L IP
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIP 195


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQ 249
           P  S+ S  ++SP P N   SS  SS     STS     A+L + G+
Sbjct: 80  PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 270
           PP      LL+S P P      S+PS  M V S+S    SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVLNNSGQSVGATSR*STPVRASSTSRTA 186
           S P   +    + PS   TV +T+    + S++  N+ Q +G++   STP   S+   + 
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503

Query: 185 GCFSN 171
           G F+N
Sbjct: 504 GGFNN 508


>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
           mRNA binding protein precursor (GI:26453355)
           [Lycopersicon esculentum]
          Length = 406

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = -2

Query: 440 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 282
           L  SSLFF +       N+++PP     SL +SS    +L+SSS  SS +   S  TS++
Sbjct: 4   LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63

Query: 281 TQSAVLNNSGQSVG 240
                      SVG
Sbjct: 64  LSPQKFTVKASSVG 77


>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 977

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 768 STRPLVPRGNXFQVVSPTKPLPTRSPNVGSFSSKPSVFTIEIKLESISEDVDSWECLVSP 589
           S RP + RG+    V+ T  L    PNV S   K ++F  + +L+     + SW+   SP
Sbjct: 2   SRRPDLLRGSVVATVAATFLLFIFPPNVESTVEKQALFRFKNRLDDSHNILQSWKPSDSP 61


>At5g25265.1 68418.m02995 expressed protein
          Length = 366

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 231 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 100
           T +  S+SV+N   CR+++   + I  ++ P +E  M  FT IL
Sbjct: 72  TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 31/102 (30%), Positives = 45/102 (44%)
 Frame = -2

Query: 500 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 321
           PG  L GN S +SL  P +    S+    AS    L    S     +S P   +  +   
Sbjct: 105 PGTPL-GNDSHSSLAAPKIA--SSARASSASKASRLSVSQSESGYHSSRPARSSSVTRPS 161

Query: 320 PSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTS 195
            S+      TS ++ S++LN S  SV +  R S+P   SS+S
Sbjct: 162 ISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 119 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVRS 259
           +I+V+    E  + + +SLKS  Q ATL T  L SI ++  +  + S
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTS 877


>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
            (PAA1) nearly identical to gi:2668492; contains Pfam
            heavy-metal-associated domain PF00403
          Length = 949

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -2

Query: 506  VIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
            V+ G  LT       L   T+  +  +L++   +N++  PIA+ V L    P    + + 
Sbjct: 839  VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894

Query: 326  SMPSSCMTVESTSKQTQSAVL 264
            SM  + M V S    T S +L
Sbjct: 895  SMAGALMGVSSLGVMTNSLLL 915


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 425 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 291
           L  K + N  LPP+ +A+ + T   FPQ+  +    S+   ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377


>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 539

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 253 PELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 396
           P    T      + D +V+QD+ I     FCG+G E   + A+    N
Sbjct: 12  PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59


>At3g05370.1 68416.m00586 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2 disease resistance
           protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
          Length = 860

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 390
           LTG D  D   ++ P + +  +   F VDS  I ++G++   K   + ++V   +     
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680

Query: 391 GNMTFQEALKKRL 429
           GN+     L K L
Sbjct: 681 GNIPESIGLLKEL 693


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,994
Number of Sequences: 28952
Number of extensions: 337173
Number of successful extensions: 1138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)