Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30470.Seq
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   6e-26
SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        32   0.55 
SB_45641| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_25896| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_53034| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32211| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_6530| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_3496| Best HMM Match : Herpes_UL49_5 (HMM E-Value=7.2)              31   1.3  
SB_1214| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_31506| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   3.0  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_40668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  114 bits (275), Expect = 6e-26
 Identities = 53/63 (84%), Positives = 58/63 (92%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISK+L+A+YQKYVDE SKK I+D LVQYDRSLLVADPRR E KKFGGPGAR+RYQK
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQK 104

Query: 437 SYR 445
           SYR
Sbjct: 105 SYR 107



 Score = 47.6 bits (108), Expect(2) = 5e-06
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 156 KLQEPILLLGKEKFSMVXIXXXVKGGGHVAQVY 254
           K++EPILLLGKE+F  V I   VKGGGH +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 20.6 bits (41), Expect(2) = 5e-06
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 30 QAVQVFGRK 56
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/46 (50%), Positives = 24/46 (52%)
 Frame = +3

Query: 588 NSPYKXVVLQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAG 725
           NSPY   +   HW SFYNV   GKTL   P LI L     P  PAG
Sbjct: 75  NSPYMSRIT-IHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAG 115


>SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/38 (52%), Positives = 21/38 (55%)
 Frame = +3

Query: 618 FHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAGGN 731
           +HW SFYNV   GKTL   P LI L     P  PAG N
Sbjct: 4   WHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAGRN 37


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 WSCSTSLPIRQAIS-KALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCE 391
           W  +  L ++       ++AF QKY+D   +K      +Q+ + +LV+  R CE
Sbjct: 36  WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_45641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/40 (50%), Positives = 21/40 (52%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAGGN 731
           +  HW SFYNV   GKTL   P LI L     P  PAG N
Sbjct: 4   ITIHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAGVN 39


>SB_25896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPF 713
           +  HW SFYNV   GKTL   P LI L    PPF
Sbjct: 4   ITIHWPSFYNV-VTGKTLAL-PNLIAL-AAHPPF 34


>SB_53034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 618 FHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPF 713
           +HW SFYNV   GKTLG   T +      PPF
Sbjct: 4   WHWPSFYNV-VTGKTLGV--TQLNRLAAHPPF 32


>SB_32211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +3

Query: 618 FHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAG 725
           +HW SFYNV   GKTL   P LI L     P  PAG
Sbjct: 61  WHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAG 92


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/38 (50%), Positives = 20/38 (52%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAG 725
           +  HW SFYNV   GKTL   P LI L     P  PAG
Sbjct: 40  ITIHWTSFYNV-VTGKTLAL-PNLIALQHI--PLSPAG 73


>SB_6530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPF 713
           +  HW SFYNV   GKTL   P LI L    PPF
Sbjct: 4   ITIHWPSFYNV-VTGKTLAL-PNLIALQ-LHPPF 34


>SB_3496| Best HMM Match : Herpes_UL49_5 (HMM E-Value=7.2)
          Length = 98

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/38 (50%), Positives = 20/38 (52%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAG 725
           +  HW SFYNV   GKTL   P LI L     P  PAG
Sbjct: 4   ITIHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAG 37


>SB_1214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +3

Query: 618 FHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPFRPAG 725
           +HW SFYNV   GKTL   P LI L     P  PAG
Sbjct: 56  WHWPSFYNV-VTGKTLAL-PNLIALQHI--PLSPAG 87


>SB_31506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPF 713
           +  HW SFYNV   GKTL   P LI L    PPF
Sbjct: 4   ITIHWPSFYNV-VTGKTLAL-PNLIALQ-HIPPF 34


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 84  KRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVXIXXXVKGGGHVAQ 248
           ++G+G++RV GR    +    + Y+L+ PI+L  K   + + I    +  GH+ Q
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQ 136


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 200 REFFLAEQKDRFLKFVLQQXGXNQ--VQWAP 114
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_40668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +1

Query: 580 GYPIRPISXSYYNFTGRRFTTSLXWGKPWGLTQL*SALXAHXP 708
           G PIRP S SYY+         L W  P G+T L + L AH P
Sbjct: 52  GAPIRPYSESYYSSLAVGL-QRLDWKNP-GVTPL-NRLEAHPP 91


>SB_46058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRLXGTXPPF 713
           +  HW SFYNV   GKTL  + T +      PPF
Sbjct: 4   ITIHWPSFYNV-VTGKTL--SVTQLNRLAAHPPF 34


>SB_14409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 612 LQFHWXSFYNVXXLGKTLGFNPTLIRL 692
           +  HW SFYNV   GK  G  P+L  L
Sbjct: 4   ITIHWPSFYNV-VTGKNTGREPSLFDL 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,581,644
Number of Sequences: 59808
Number of extensions: 394663
Number of successful extensions: 682
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)