Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30470.Seq
         (735 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                 121   2e-27
BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.       121   2e-27
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...   121   2e-27
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...   121   2e-27
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...   121   2e-27
AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens ...    71   4e-12

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score =  121 bits (292), Expect = 2e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  PIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 203
           P+Q+VQVFGRK TATAVA+CKRG+G+++VNGRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 204 VXIXXXVKGGGHVAQVY 254
           V I   VKGGGHVAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score =  121 bits (291), Expect = 3e-27
 Identities = 55/63 (87%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKK IKD L+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146


>BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.
          Length = 152

 Score =  121 bits (292), Expect = 2e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  PIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 203
           P+Q+VQVFGRK TATAVA+CKRG+G+++VNGRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 204 VXIXXXVKGGGHVAQVY 254
           V I   VKGGGHVAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  121 bits (292), Expect = 2e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  PIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 203
           P+Q+VQVFGRK TATAVA+CKRG+G+++VNGRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 204 VXIXXXVKGGGHVAQVY 254
           V I   VKGGGHVAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score =  121 bits (291), Expect = 3e-27
 Identities = 55/63 (87%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKK IKD L+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  121 bits (292), Expect = 2e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  PIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 203
           P+Q+VQVFGRK TATAVA+CKRG+G+++VNGRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 204 VXIXXXVKGGGHVAQVY 254
           V I   VKGGGHVAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score =  121 bits (291), Expect = 3e-27
 Identities = 55/63 (87%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKK IKD L+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  121 bits (292), Expect = 2e-27
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +3

Query: 24  PIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSM 203
           P+Q+VQVFGRK TATAVA+CKRG+G+++VNGRPL+++ P  LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 204 VXIXXXVKGGGHVAQVY 254
           V I   VKGGGHVAQ+Y
Sbjct: 66  VDIRVRVKGGGHVAQIY 82



 Score =  121 bits (291), Expect = 3e-27
 Identities = 55/63 (87%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+ISKAL+A+YQKYVDEASKK IKD L+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84  IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146


>AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40618 fis, clone THYMU2013089, moderately
           similar to 40S RIBOSOMAL PROTEIN S16. ).
          Length = 178

 Score = 70.9 bits (166), Expect = 4e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ+F  K  A AV  C+ G G +R+N  PL+++    LQYKL E  LLL KE+ + +
Sbjct: 18  LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77

Query: 207 XIXXXVKGGGHVAQVY 254
            I   VKG GHV Q+Y
Sbjct: 78  DIHVRVKGSGHVVQIY 93



 Score = 34.7 bits (76), Expect = 0.35
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQ 349
           + Q ISKAL+  Y KYVDEAS++ IKD L +
Sbjct: 95  VLQYISKALVPCYPKYVDEASEE-IKDTLTR 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,629,926
Number of Sequences: 237096
Number of extensions: 2082024
Number of successful extensions: 3541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3541
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)