Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30470.Seq
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   109   2e-24
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    29   3.4  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    29   3.4  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/76 (61%), Positives = 62/76 (81%)
 Frame = +3

Query: 27  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FGRK TATAVA+CK+G G+++VNGRPL+ + P +L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 207 XIXXXVKGGGHVAQVY 254
            I   V GGGHVAQ+Y
Sbjct: 65  DIRIRVSGGGHVAQIY 80



 Score =  101 bits (243), Expect = 4e-22
 Identities = 45/63 (71%), Positives = 54/63 (85%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           +RQA++KAL+A+Y KYVDE SK+ +K+    YD+SLLVADPRR E KKFGGPGARARYQK
Sbjct: 82  VRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQK 141

Query: 437 SYR 445
           SYR
Sbjct: 142 SYR 144


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 242 YMTTTLDXXXDXNHREFFLAEQKDRFLKFVLQQXGXNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+       NHR + L E ++  L   +     +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 242 YMTTTLDXXXDXNHREFFLAEQKDRFLKFVLQQXGXNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+       NHR + L E ++  L   +     +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 362 LLVADPRRCEPKKFGGPGARARY 430
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,253
Number of Sequences: 27780
Number of extensions: 282127
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)