Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30470.Seq
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           115   4e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   115   4e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   114   7e-26
At1g43570.1 68414.m05001 hypothetical protein                          30   1.8  
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    28   5.6  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    27   9.8  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/63 (82%), Positives = 59/63 (93%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKYVDE SKK IKD LV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/75 (52%), Positives = 57/75 (76%)
 Frame = +3

Query: 30  QAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVX 209
           ++VQ FGRK TA AV +CKRG G++++NG P++L  P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 210 IXXXVKGGGHVAQVY 254
           +   V GGGH +QVY
Sbjct: 68  MRIRVNGGGHTSQVY 82


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/63 (82%), Positives = 59/63 (93%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQ+I+KAL+A+YQKYVDE SKK IKD LV+YDR+LLVADPRRCEPKKFGG GAR+RYQK
Sbjct: 84  IRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQK 143

Query: 437 SYR 445
           SYR
Sbjct: 144 SYR 146



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = +3

Query: 30  QAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVX 209
           ++VQ FGRK TA AV +CKRG G++++NG P++L  P +L++K+ EPILLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 210 IXXXVKGGGHVAQVY 254
           +   V GGGH +QVY
Sbjct: 68  MRIRVNGGGHTSQVY 82


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  114 bits (274), Expect = 7e-26
 Identities = 53/73 (72%), Positives = 62/73 (84%)
 Frame = +2

Query: 227 GWWSCSTSLPIRQAISKALIAFYQKYVDEASKKXIKDXLVQYDRSLLVADPRRCEPKKFG 406
           G  + S    IRQ+I+KAL+A+YQKYVDE SKK IKD L++YDR+LLVADPRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 407 GPGARARYQKSYR 445
           GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 39/75 (52%), Positives = 57/75 (76%)
 Frame = +3

Query: 30  QAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVX 209
           ++VQ FGRK TATAV YCKRG GM+++NG P++L  P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 210 IXXXVKGGGHVAQVY 254
           +     GGG+ ++VY
Sbjct: 68  MRIRATGGGNTSRVY 82


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 387 QRRGSATSKLLSYCTRXSLIXFFEASSTYFW*KAIR 280
           +R  S T + LSYC R  LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 48  GRKXTATAVAYCKRGHGMLRVNGRPLDLVXPXLLQYKLQEPILLLGKEKFSMVXIXXXVK 227
           GR+  + A  + + G G  +VN +  D+  P +L ++      L   +      I   VK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 228 GGGHVAQV 251
           GGG   QV
Sbjct: 369 GGGTTGQV 376


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 108 HAAFHDHACNTQLRWRXSYVRILGRPGWXHXLPP 7
           H   HD+  NT   W  S+++      W    PP
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPP 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,784
Number of Sequences: 28952
Number of extensions: 273095
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)