Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30469.Seq
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.82 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.82 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.82 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 233 WSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDI 340
           WS S   P+  +I K ++ +Y KY +   K   +++
Sbjct: 408 WSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTEEL 443


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 233 WSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDI 340
           WS S   P+  +I K ++ +Y KY +   K   +++
Sbjct: 408 WSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTEEL 443


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 233 WSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDI 340
           WS S   P+  +I K ++ +Y KY +   K   +++
Sbjct: 34  WSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTEEL 69


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 242  YMTTTLDCHSDXNHREFFLAEQKD 171
            ++TTT+DC +   + E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,199
Number of Sequences: 438
Number of extensions: 4868
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)