Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30468.Seq
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.0  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   7.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 114 SENTKCNGSSGYSKHSKXL 170
           SE T CNGS G S   + L
Sbjct: 300 SEKTLCNGSKGISPEQEEL 318


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  RQRXSYSRHFLLYF*HKIHFKIAVT 9
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  RQRXSYSRHFLLYF*HKIHFKIAVT 9
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  RQRXSYSRHFLLYF*HKIHFKIAVT 9
           RQR +Y+RH +L    + H+   +T
Sbjct: 235 RQRTAYTRHQILELEKEFHYNRYLT 259


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +2

Query: 620 GNXYIPYXSYXPF*KPTAGXQGGKCACPKGY 712
           G  Y P   + PF  PT       C C   Y
Sbjct: 753 GQAYFPGSRFHPFLIPTGFDSCTVCTCDAKY 783


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 683 GGKCACPKGY 712
           G KC CP+G+
Sbjct: 359 GHKCTCPEGF 368


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = -3

Query: 228 DCNIPNIVNQHLIQTNWPKGXXYYVCYSRCCHYILCS 118
           +C +  +++        PK    + C  RC  YI  S
Sbjct: 40  ECQVTPVIHVLQYPGCVPKPIPSFACIGRCASYIQVS 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,715
Number of Sequences: 336
Number of extensions: 2695
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)