Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30468.Seq
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   83   3e-16
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   6e-13
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  71   1e-12
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      69   5e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   2e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              44   2e-04
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              41   0.001
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)             40   0.002
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            32   0.43 
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.75 
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)                 29   4.0  
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/72 (51%), Positives = 55/72 (76%)
 Frame = +3

Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
           +K +    PAAK+LVEL+++QD EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 429 RLACKEAVKYIQ 464
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 18/31 (58%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +1

Query: 169 SLGPVGLDKMLVD--DIGDVTVTNDGATILK 255
           +LGP G+DK+L      G++ VTNDGATILK
Sbjct: 39  TLGPKGMDKILQSFGQNGNIQVTNDGATILK 69


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 29/75 (38%), Positives = 52/75 (69%)
 Frame = +3

Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
           ++ ++   PAAK ++E+++ QD EVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 429 RLACKEAVKYIQDNL 473
           RLA  + +  ++  +
Sbjct: 69  RLAMDDMIDILKQQI 83


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
 Frame = +3

Query: 255 MLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 434
           M+E     AK++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY L
Sbjct: 78  MMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYEL 137

Query: 435 ACKEAVKY---IQDNLTV 479
           A K A+++   I DN  V
Sbjct: 138 AAKIALEHMDSIADNFPV 155



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATIL 252
           SLGP G+DKM+V   G+VTVTNDGATIL
Sbjct: 49  SLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 29/72 (40%), Positives = 50/72 (69%)
 Frame = +3

Query: 258 LEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 437
           ++   PAAK ++E+++ QD EVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268

Query: 438 CKEAVKYIQDNL 473
             + +  ++  +
Sbjct: 269 MDDMIDILKQQI 280


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 30/56 (53%), Positives = 45/56 (80%)
 Frame = +3

Query: 297 LAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 464
           L+++QD EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +3

Query: 273 PAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 452
           P A ++  +A  QD   GDGTTS V+I  ELLK AD  V   +HP  +  G+ +A K+A+
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233

Query: 453 KYIQD 467
           + +++
Sbjct: 234 EVLEE 238


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATI 249
           SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 43  SLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +1

Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATIL 252
           +LGP G+DK++VD  G  T++NDGATI+
Sbjct: 674 TLGPRGMDKLIVDGRGKATISNDGATII 701


>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
          Length = 131

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +2

Query: 509 IXTAXTTMSSKLIGADADFFSEXVVDAAQAIXTMNPRGNXYIPYXSYXPF*KPTAGXQGG 688
           +  A T +SSKLIG   DFF+  +VDA  A+     +G    P  +         G    
Sbjct: 14  VSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVL--KAHGGSAK 71

Query: 689 KCACPKGYALN 721
           +     GYALN
Sbjct: 72  ESILVDGYALN 82


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
           S GP GLD ML    G++ +TN G+ IL+
Sbjct: 19  SFGPNGLDVMLRSSSGNILITNSGSMILE 47


>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 518 AXTTMSSKLIGADADFFSEXVVDAAQAIXTMNP 616
           A T +SSKLI    +FF++ VVDA   +  + P
Sbjct: 28  AATALSSKLIATQKEFFAKMVVDAVMMLDELLP 60


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 360 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 473
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
          Length = 472

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 246 CGTIVSDCNIPNIVNQHLIQTNWPKGXXYYVCYSRCCHYILCSHWV 109
           C  + +DCN        L      +G     CY  CC   LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433


>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 CRRPSENTKCNGSSGYSKHSKXLPWAS 182
           C  P  +T+C G  G+ + S+ LP+ S
Sbjct: 283 CIFPENDTECGGGRGFEEGSRLLPYES 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,979
Number of Sequences: 59808
Number of extensions: 327315
Number of successful extensions: 673
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)