Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30468.Seq
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 123 1e-28
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 85 5e-17
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 75 7e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 70 2e-12
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 70 2e-12
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 66 3e-11
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 65 5e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 64 9e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 52 4e-07
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 51 7e-07
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 38 0.009
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 32 0.35
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 30 1.4
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 29 3.3
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 29 4.3
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 29 4.3
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 28 5.7
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 123 bits (297), Expect = 1e-28
Identities = 60/87 (68%), Positives = 72/87 (82%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++MLE PAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGY
Sbjct: 65 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSL 509
RLA +E+ KYI++ L VE LG+ L
Sbjct: 125 RLAMRESCKYIEEKLVTKVEKLGKVPL 151
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/55 (60%), Positives = 36/55 (65%)
Frame = +1
Query: 91 GQDPAGDPVRTQXXXXXXXXXXXXXXSLGPVGLDKMLVDDIGDVTVTNDGATILK 255
G +G VRTQ SLGPVGLDKMLVDDIGDVT+TNDGATIL+
Sbjct: 12 GDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILR 66
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 509 IXTAXTTMSSKLIGADADFFSEXVVDAAQAIXTMNPRGNXYIP 637
I A T+MSSKLI D+DFF+ VV+A ++ N RG P
Sbjct: 152 INCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYP 194
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 85.0 bits (201), Expect = 5e-17
Identities = 38/63 (60%), Positives = 53/63 (84%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K L PAAKVLV+++++QD EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 429 RLA 437
R+A
Sbjct: 126 RMA 128
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGD--VTVTNDGATILK 255
+LGP G+DK+L VTVTNDGATILK
Sbjct: 37 TLGPKGMDKILQSTGRGHAVTVTNDGATILK 67
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 74.5 bits (175), Expect = 7e-14
Identities = 35/80 (43%), Positives = 56/80 (70%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K+L+ PAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 429 RLACKEAVKYIQDNLTVTVE 488
R A A+ +++ L V++E
Sbjct: 129 RTASTLAIAKVKE-LAVSIE 147
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+LGP G+DK++ DD G VT++NDGATI+K
Sbjct: 42 TLGPRGMDKLIHDDKGSVTISNDGATIMK 70
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 518 AXTTMSSKLIGADADFFSEXVVDAAQAI 601
A TT+SSKLIG + +FF+ VVDA AI
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/87 (44%), Positives = 50/87 (57%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ +E PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 429 RLACKEAVKYIQDNLTVTVESLGRPSL 509
AC +A+ I + V VE R SL
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDRDSL 159
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATIL 252
SLGP G+DKM+ G+V +TNDGATIL
Sbjct: 47 SLGPKGMDKMISTANGEVIITNDGATIL 74
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/82 (40%), Positives = 51/82 (62%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+ LE PAAK+LV A+ Q E+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 429 RLACKEAVKYIQDNLTVTVESL 494
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATIL 252
SLGP G++KM+++ + + VTND ATI+
Sbjct: 46 SLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/80 (36%), Positives = 53/80 (66%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ L+ PAAK ++EL++ QD EVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 429 RLACKEAVKYIQDNLTVTVE 488
A ++++ + D + ++++
Sbjct: 125 IKALEDSIA-VLDKIAMSID 143
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+LGP + KML+D G + VTNDG IL+
Sbjct: 38 TLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/72 (38%), Positives = 48/72 (66%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
++ ++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 429 RLACKEAVKYIQ 464
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
SLGP G+DKML GD+T+TNDGATIL+
Sbjct: 47 SLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 458
AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A + AV++
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 459 IQ 464
++
Sbjct: 68 LE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K ++ P A ++ A QD GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 429 RLACKEAVKYIQDNLTVTV 485
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+LGP G KMLV GD+ +T DG T+LK
Sbjct: 36 NLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +3
Query: 249 IKMLEXXXPAAKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 428
+K ++ P A ++ A QD GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 429 RLACKEAVKYIQDNLTVTV 485
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+LGP G KMLV GD+ +T DG T+LK
Sbjct: 36 NLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 458
A ++ E+A + GDGTT+ +I+A E++K + + S+ +G KE V+
Sbjct: 102 ATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRV 161
Query: 459 IQ 464
+Q
Sbjct: 162 LQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 458
A ++ E+A + GDGTT+ I+A E++K+ V + +P S+ G + ++
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 459 IQ 464
+Q
Sbjct: 175 LQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 452
AK++ + A + GDGTT+ V++A L+ ++V +P I G K V
Sbjct: 122 AKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 458
AK++ + A + GDGTT+ V++A + ++V +P I G K V
Sbjct: 122 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNE 181
Query: 459 IQ 464
++
Sbjct: 182 LK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 452
AK++ + A + GDGTT+ V++A + ++V +P I G K V
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 279 AKVLVELAQLQDXEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAV 452
AK++ + A + GDGTT+ V++A + ++V +P I G K V
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 169 SLGPVGLDKMLVDDIGDVTVTNDGATILK 255
+LGP G + +L + G + NDG T+LK
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,872
Number of Sequences: 28952
Number of extensions: 223332
Number of successful extensions: 406
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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