Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30467.Seq
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396 32 0.54
03_05_0760 - 27505860-27506148,27507647-27508580,27508677-275087... 29 2.9
02_04_0097 - 19673312-19673836 29 2.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 2.9
04_04_1137 - 31153104-31153239,31153804-31154660,31155053-311552... 29 3.8
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 29 5.0
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 29 5.0
10_08_0142 - 15169825-15170538 28 8.8
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961... 28 8.8
>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
Length = 217
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 372 LDNSSVGIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPIRATNG 506
LD+ V ++S L V + V +RG+ R HE LSP+R +G
Sbjct: 140 LDSGGVELQSTLGVNVGEDLV--LVRGWPRRCHELRLSPVRGEDG 182
>03_05_0760 -
27505860-27506148,27507647-27508580,27508677-27508792,
27508876-27508945,27509027-27509183
Length = 521
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 492 RATNGGAS--TRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTELPEKPTIGPREKPID 665
+ TNG +RL++G+ +PL S+ PS + K P P++ + P+
Sbjct: 119 QGTNGNQKQQSRLKEGAR--LPLPREASYSSSPPSVIVREAKPRRSPSVPSLEEDDSPVQ 176
Query: 666 C 668
C
Sbjct: 177 C 177
>02_04_0097 - 19673312-19673836
Length = 174
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 574 ESPVLVVRGITR*LPCWRRVDAPPLVARIGDSSGSWLFL 458
E +V + LP W R PP ++ IG WL+L
Sbjct: 75 EEKTVVPAALAPPLPAWTRAAFPPPISVIGAGGKPWLYL 113
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 417 KSNNY-VNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPST 593
K NNY +N+Q+ IR S E++ + A LQQ L T T ST
Sbjct: 1006 KDNNYRLNQQLEE-IRTSLHAEIAALHEEKDAAQLELQQSLASARNLETVLEKQTENLST 1064
Query: 594 LAHA 605
L HA
Sbjct: 1065 LQHA 1068
>04_04_1137 -
31153104-31153239,31153804-31154660,31155053-31155202,
31156188-31156292,31156405-31156473
Length = 438
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 498 TNGGASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTELPEKPTIGPREKPIDCYLD 677
+N G+ + G R P T+ G PA L H + P K G R K Y+D
Sbjct: 3 SNEGSHRITRSGIVRAKPAVTADGKIEPAGEGLPHGWLKEYRPRKNQSGSRVKGDTFYID 62
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 376 TTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSK 531
++P AS + S + S++ SED+S + MS C R RP E+ +K
Sbjct: 5 SSPDPASSSPSASSSPSSPSSSSSEDSS-SPMSMPCKRRARPRTEKSTGKAK 55
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 462 NSHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTE 620
N H P + A ++ + P+TT T +TP+ +TL AL E
Sbjct: 710 NKHSPAIKHPAVAPTVAPPVATSSAHHIAPVTTPTVSTTPSMATLTGALANRE 762
>10_08_0142 - 15169825-15170538
Length = 237
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 231 HLLS*WMFKCAVCGT 275
HL++ W+F CAVC T
Sbjct: 5 HLVAAWLFPCAVCAT 19
>09_04_0245 +
15995689-15995742,15995979-15996075,15996165-15996185,
15996442-15996573,15996707-15996834,15996919-15997203,
15997391-15997521,15999700-15999817,16000609-16000703,
16001437-16001511,16001860-16001911,16002767-16002859,
16003625-16003690,16003785-16003867,16003942-16004054,
16005271-16005410,16005569-16005643,16006084-16006160,
16006426-16006514,16008039-16008085,16009004-16009138,
16009298-16009345,16009605-16009667,16009709-16009730,
16010284-16010458,16014250-16014321,16014887-16014958,
16015904-16016005,16016197-16016225,16016333-16016403,
16016549-16016597,16016684-16016784,16017495-16017623,
16017683-16017752,16017975-16018194,16019368-16019389,
16019457-16019604,16021569-16021693,16022344-16022774,
16022984-16023110,16023241-16023292,16023351-16023502
Length = 1461
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 646 GPMVGFSGSSVCFKACANVEGAGVESPVLVVRGITR*LPCWRRVDAPPLVARIG 485
GP+VGF G+ V C E + P+ ++R + + RV P L RIG
Sbjct: 244 GPLVGFDGNFVGMNFCDKKETPFL--PINIIRKCLKHFDMFGRVVQPWLGLRIG 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,946
Number of Sequences: 37544
Number of extensions: 442487
Number of successful extensions: 1262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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