Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30467.Seq
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) 37 0.019
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 1.7
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 30 1.7
SB_40633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 2.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 2.2
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 29 2.9
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 3.9
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 28 9.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 9.0
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 37.5 bits (83), Expect = 0.011
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGS 536
EQ RG Y S +PE L I ++ Q GS
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGS 313
>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
Length = 583
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +3
Query: 408 NVPKSNNYVNEQIRGYIRNSHEP--ELSPIRATNGGASTR-----LQQGSYRVIPLTTST 566
+VP+S + + EQ RG R S + + P+ GA T S+RV+ ++S+
Sbjct: 397 SVPESAHVLQEQQRGETRESRQTLDSICPVDDIRSGADTEDLTRSSSHSSFRVLSHSSSS 456
Query: 567 GDSTPAPSTLAHALKQTELPEKPTIGP 647
G A ++H +P++PT+GP
Sbjct: 457 GS---ADGIMSHPEGLLGVPQRPTLGP 480
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 468 HEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPST 593
H PE+SPI+ T+ S ++ + V+P+ T+ D +P +T
Sbjct: 116 HPPEVSPIKTTHSEVSP-IETTPFHVLPIKTTHTDVSPIETT 156
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 465 SHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTELPE 629
S PE + + T ST + + P+TT D+T +P+T A AL+ T +PE
Sbjct: 449 SATPETTMVPETTSAPSTTMAPET-TATPVTTMAPDTTTSPATTA-ALETTMVPE 501
>SB_40633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +2
Query: 524 PARELSRDTPDYQYGRFDASALHIS----TRLKANRASRKAYHRAERKTYRLLLGSSEQT 691
P+ ELS + YQ G+F + H++ T +KA + E+ Y L+ S E+
Sbjct: 47 PSEELSNEPNAYQGGQFKLNCSHVNEAIVTEIKALSGDAGCKNGGEKCLYILVKSSPEEV 106
Query: 692 KL--EMKHRQEEDD 727
K E + +DD
Sbjct: 107 KAIHETPKKHYKDD 120
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 465 SHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTELPE 629
S PE++ + T +T + + P+TT ++T AP+T A AL+ T +PE
Sbjct: 3304 SAAPEITMVPETTSAPATTMAPET-TAAPVTTMAPETTAAPATTA-ALETTMVPE 3356
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 590 HISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEMKHR 712
H +R K++R SRK HR R K++R+ S + E HR
Sbjct: 77 HRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISREKSHR 118
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 527 ARELSRDTPDYQYGRFDASALHISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEM 703
+RE S + R H +R K++R SRK HR R K++R+ S + +
Sbjct: 112 SREKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKK 171
Query: 704 KHR 712
HR
Sbjct: 172 SHR 174
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 RFDASALHISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEMKHR 712
R H +R K++R SRK HR R K++R+ S + + HR
Sbjct: 78 RISRKKSHRISRKKSHRISRKKSHRISRKKSHRISREKSHRISRKKSHR 126
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 RFDASALHISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEMKHR 712
R H +R K++R SRK HR R K++R+ S + + HR
Sbjct: 110 RISREKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHR 158
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 RFDASALHISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEMKHR 712
R H +R K++R SRK HR R K++R+ S + + HR
Sbjct: 150 RISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHR 198
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 RFDASALHISTRLKANRASRKAYHRAER-KTYRLLLGSSEQTKLEMKHR 712
R H +R K++R SRK HR R K++R+ S + + HR
Sbjct: 102 RISRKKSHRISREKSHRISRKKSHRISRKKSHRISRKKSHRISRKKSHR 150
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
T ++ TK Y+A +AT + AT T +++ S TCP T + S +
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415
Query: 463 TAMSQNCLRSGRPTV 507
A + C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 467 P*ARTVSDPGDQRWSVHASPARELSRDTPDYQYG 568
P A ++DP RW V AS +LS D P+++ G
Sbjct: 1162 PQANRIADPVSSRWGVDAS--LKLSADPPEFKPG 1193
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +3
Query: 255 KCAVCGTKLTLKTYYNN--QHWTEDK------EVYCSSHVP 353
KC VCGT+L L+ Y + Q ++ D+ +V C +HVP
Sbjct: 927 KCTVCGTQLLLQGYTKSHPQCFSIDRLDDGSLQVECQTHVP 967
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 483 SPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPST 593
S I + + GA + V PLTT+ +ST AP T
Sbjct: 382 STIASESSGAPGTTESSESTVEPLTTAASESTVAPGT 418
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTA 468
T T+ T YT+ +Y + T +TP + S TC + T++T+ + TS T+
Sbjct: 168 TSTTSYTSTTSYTSTTSYTPTPSYT-STPSYTSTTSYTCTTSYTSTTSYTCTTSYTS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,716
Number of Sequences: 59808
Number of extensions: 529136
Number of successful extensions: 1834
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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