Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30467.Seq
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 31 0.60
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 31 0.60
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 29 2.4
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 4.2
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 29 4.2
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 28 7.3
At3g43160.1 68416.m04554 expressed protein merozoite surface pro... 28 7.3
At3g44500.1 68416.m04783 Ulp1 protease family protein similar to... 27 9.7
At1g58090.1 68414.m06583 F-box family protein contains F-box dom... 27 9.7
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden... 27 9.7
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
+SI ++T+ T+LA+ + + + P+ ASE +S PKA ST+ + S +
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615
Query: 484 LRSGR 498
LRS +
Sbjct: 1616 LRSDK 1620
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
+SI ++T+ T+LA+ + + + P+ ASE +S PKA ST+ + S +
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615
Query: 484 LRSGR 498
LRS +
Sbjct: 1616 LRSDK 1620
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 444 IRGYIRNSHEPELSPIRATNG-GASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHALKQTE 620
+R + S + + +P+ ++ STR ++ RV+ G++ ++
Sbjct: 160 VRKKVEVSKDQDATPVESSAAVETSTRPKRLCRRVLDFEAENGENQTNGDIREAGEMESA 219
Query: 621 LPEKPTIGPREKPIDCYLDRVSKPNLK*NTGKKKTI 728
L EK ++ DC L S P K + GK+K +
Sbjct: 220 LQEKQLDSGNQELKDCLLSAPSTPKRKRSQGKRKGV 255
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/89 (29%), Positives = 40/89 (44%)
Frame = +2
Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQ 502
Q LL R + + Q HQ++ Q+ Q+Q +Q+ Q+ HQ QP P Q
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP-------PSQQ 164
Query: 503 RWSVHASPARELSRDTPDYQYGRFDASAL 589
+ ++P + + TP Q R D S L
Sbjct: 165 Q-QQQSTPQHQ-QQPTPQQQPQRRDGSHL 191
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +2
Query: 443 DQRIHQEQP*ARTVSD------PGDQRWSVHASPARE 535
D+ QE P + TVSD PG RWS++ PA+E
Sbjct: 610 DKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAKE 646
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
C +CG + + YY+ + D ++YC+ + P
Sbjct: 83 CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114
>At3g43160.1 68416.m04554 expressed protein merozoite surface
protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
Length = 295
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 426 NYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPSTLAHA 605
+YV E G +S S R NG + + ++ G PL S S
Sbjct: 116 DYVLESSTGTENSSTRTAESSTRTKNGRSKSIVESGQSMGTPLLGSDLGSDRG------I 169
Query: 606 LKQTELP-EKPTIGPREKPIDCYLD 677
L T+ ++PT+ P ++P DC D
Sbjct: 170 LSDTDTRNDRPTVRPTDRPTDCPTD 194
>At3g44500.1 68416.m04783 Ulp1 protease family protein similar to
At1g32840, At4g04010, At2g06430, At2g15140, At2g04980,
At2g14130, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 805
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 509 SVHASPARELSRDTPDYQYGRFDASALHISTRLKANRASRK 631
SVHA ++ + P + + D++ +H+ TR +A RK
Sbjct: 495 SVHAEDNLKIRKQVPRKRQKQVDSADVHVPTRKEAQSKKRK 535
>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
Pfam:PF00646
Length = 371
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 373 WTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPT 504
W +W ++A +TC KAI +R E + +C G+ T
Sbjct: 120 WRQTKWIAKAENTCGKAIGYDGSRPEKSYKIIGRSSCSWQGKVT 163
>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
[Arabidopsis thaliana]; contains Pfam profiles PF01966:
HD domain, PF04607: Region found in RelA / SpoT proteins
Length = 712
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Frame = +2
Query: 458 QEQP*ARTVSD------PGDQRWSVHASPARE 535
QE P TVSD PG RWS+++ PA+E
Sbjct: 613 QEFPENSTVSDLLRRAGPGSSRWSMYSIPAKE 644
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,380
Number of Sequences: 28952
Number of extensions: 350375
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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