Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30466.Seq
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    36   3e-04
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    33   0.002
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   7.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVXPY---------EPTPKXSEXF----KSVVPDNKPXGY 279
           P  ++LPKGT  G+P  LFV +  Y           T    + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 278 PFDR 267
           PFDR
Sbjct: 642 PFDR 645


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVXPYEPTPKXSEXFKSV--------------VPDNKPXG 282
           P  +++PKGT +G   QLFV +  Y+   K  +  + V               PD +  G
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYD-DDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMG 641

Query: 281 YPFDR 267
           YPFDR
Sbjct: 642 YPFDR 646


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 400 LRVHTMDSPSSCLY 359
           +R HT + P SC Y
Sbjct: 27  IRTHTGEKPFSCTY 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,459
Number of Sequences: 336
Number of extensions: 2186
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)