Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30466.Seq
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    28   6.9  

>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
 Frame = -2

Query: 416 SRLMLPKGTYDGFPFQLFVFVXPYEP------TPKXSEXFKSVVPDNKPXGYPFDRPVLP 255
           SR  LP  T D FP    +   P  P      TP  +       PD K    P  RPV P
Sbjct: 286 SRRSLPSMTSDFFPPVAAIAAPPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQP 345

Query: 254 S 252
           S
Sbjct: 346 S 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,835
Number of Sequences: 37544
Number of extensions: 217852
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)