Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30466.Seq
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 257  PSTXXNLTCSXRRSWSXMKENYSPIYLTFLTIHQIKRNYNAXIRKSKRTLTIT 99
            P T   LT     S   + E ++P+   +L  ++IK NY    +++K+T T T
Sbjct: 889  PQTLFKLTGEREMSADPLLEYFAPLR-KWLFNYRIKNNYTLGWKQAKKTTTTT 940


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVXPYEPTPKXSEXFKSVVPDNKPXGYP 276
           PS ++ P+  Y G+PFQ      P  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQY-----PGTPPPPMYPAFPPIFPSSPPPEYP 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,156
Number of Sequences: 59808
Number of extensions: 256522
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)