Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30466.Seq
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 338 TPKXSEXFKSVVPDNKPXGYPFDRPVLPST 249
           TPK  +  +  VP N+P    F RPV+P T
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPKT 157


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 344 EPTPKX-SEXFKSVVPDNKPXGYPFDRPV 261
           +PTPK  SE F   +P +KP   PF  P+
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPM 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,978,232
Number of Sequences: 27780
Number of extensions: 192157
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)