Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30465.Seq
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0198 - 2158139-2158334,2158517-2158641,2158736-2158789,215...    32   0.57 
10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396           32   0.57 
05_02_0113 - 6748198-6748758                                           31   1.3  
07_03_0705 - 20846810-20848165                                         29   3.1  
02_04_0097 - 19673312-19673836                                         29   3.1  
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   5.3  
10_08_0142 - 15169825-15170538                                         28   9.3  

>10_01_0198 -
           2158139-2158334,2158517-2158641,2158736-2158789,
           2159038-2159342,2159677-2159860,2159908-2159999,
           2161777-2161885
          Length = 354

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 524 PARELSRDTPDYQYGRFDASALPHSTRLKANRA 622
           P + +S  + +Y+Y RF +SA+P ++  + NRA
Sbjct: 318 PQQPMSSSSENYRYHRFSSSAIPDASSSRTNRA 350


>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
          Length = 217

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 372 LDNSSVGIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPIRATNG 506
           LD+  V ++S L V    + V   +RG+ R  HE  LSP+R  +G
Sbjct: 140 LDSGGVELQSTLGVNVGEDLV--LVRGWPRRCHELRLSPVRGEDG 182


>05_02_0113 - 6748198-6748758
          Length = 186

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 590 PHSTRLKANRASRKPTIRPRGKTYRLLTXIEMSK 691
           PH T+ K+N    +PT+   GK+ RLLT +E  +
Sbjct: 143 PHPTKSKSNDGGPRPTV--AGKSLRLLTKLERER 174


>07_03_0705 - 20846810-20848165
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 640 NGRLSGSSVCFKACAMWKGAGVESPVLVVR 551
           NG   G  +CF A A   G+GV  P LV+R
Sbjct: 348 NGTRFGFDLCFDATAAGGGSGVPVPTLVLR 377


>02_04_0097 - 19673312-19673836
          Length = 174

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 574 ESPVLVVRGITR*LPCWRRVDAPPLVARIGDSSGSWLFL 458
           E   +V   +   LP W R   PP ++ IG     WL+L
Sbjct: 75  EEKTVVPAALAPPLPAWTRAAFPPPISVIGAGGKPWLYL 113


>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 376 TTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSK 531
           ++P  AS + S      + S++ SED+S + MS  C R  RP  E+    +K
Sbjct: 5   SSPDPASSSPSASSSPSSPSSSSSEDSS-SPMSMPCKRRARPRTEKSTGKAK 55


>10_08_0142 - 15169825-15170538
          Length = 237

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 231 HLLS*WMFKCAVCGT 275
           HL++ W+F CAVC T
Sbjct: 5   HLVAAWLFPCAVCAT 19


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,164,672
Number of Sequences: 37544
Number of extensions: 486502
Number of successful extensions: 1292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)