Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30465.Seq
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 1.8
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 2.4
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 4.1
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 28 9.5
SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041) 28 9.5
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 9.5
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 37.5 bits (83), Expect = 0.012
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGS 536
EQ RG Y S +PE L I ++ Q GS
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGS 313
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 468 HEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTP 581
H PE+SPI+ T+ S ++ + V+P+ T+ D +P
Sbjct: 116 HPPEVSPIKTTHSEVSP-IETTPFHVLPIKTTHTDVSP 152
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
T ++ TK Y+A +AT + AT T +++ S TCP T + S +
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415
Query: 463 TAMSQNCLRSGRPTV 507
A + C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 467 P*ARTVSDPGDQRWSVHASPARELSRDTPDYQYG 568
P A ++DP RW V AS +LS D P+++ G
Sbjct: 1162 PQANRIADPVSSRWGVDAS--LKLSADPPEFKPG 1193
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +3
Query: 255 KCAVCGTKLTLKTYYNN--QHWTEDK------EVYCSSHVP 353
KC VCGT+L L+ Y + Q ++ D+ +V C +HVP
Sbjct: 927 KCTVCGTQLLLQGYTKSHPQCFSIDRLDDGSLQVECQTHVP 967
>SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041)
Length = 448
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 637 GRLSGSSVCFKACAMWKGAGVESPVLVVRGITR*LPCWRRVDAP 506
G L S +C A MW+ V + VLV+ + P +RR+ AP
Sbjct: 11 GHLILSCLCLSALGMWRSWVVSAVVLVLTSLVAAGP-YRRLPAP 53
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTA 468
T T+ T YT+ +Y + T +TP + S TC + T++T+ + TS T+
Sbjct: 168 TSTTSYTSTTSYTSTTSYTPTPSYT-STPSYTSTTSYTCTTSYTSTTSYTCTTSYTS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,682,204
Number of Sequences: 59808
Number of extensions: 578188
Number of successful extensions: 1875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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