Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30465.Seq
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 66 3e-11
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 66 3e-11
U39998-7|AAK71422.2| 100|Caenorhabditis elegans Hypothetical pr... 59 3e-09
L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical pr... 35 0.073
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 32 0.51
U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical pr... 31 1.2
U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trn... 31 1.2
U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trn... 31 1.2
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 30 1.6
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 6.3
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical... 28 8.3
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 28 8.3
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNY 431
FKC +CGT+L LKTY NN++ DKEVYCS+HVP GP L +S S N+ +N+
Sbjct: 34 FKCYICGTRLALKTYCNNRNDINDKEVYCSNHVPIAGPHDLPMASTN-GSGKNLENNNHV 92
Query: 432 VN 437
N
Sbjct: 93 KN 94
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
C RC + VY D+VGPLKD TFFH GC
Sbjct: 7 CNRCGKQVYPTDKVGPLKDSTFFHQGC 33
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNY 431
FKC +CGT+L LKTY NN++ DKEVYCS+HVP GP L +S S N+ +N+
Sbjct: 34 FKCYICGTRLALKTYCNNRNDINDKEVYCSNHVPIAGPHDLPMASTN-GSGKNLENNNHV 92
Query: 432 VN 437
N
Sbjct: 93 KN 94
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
C RC + VY D+VGPLKD TFFH GC
Sbjct: 7 CNRCGKQVYPTDKVGPLKDSTFFHQGC 33
>U39998-7|AAK71422.2| 100|Caenorhabditis elegans Hypothetical
protein ZK622.4 protein.
Length = 100
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGP 365
FKC +CGT+L+LKTY+NN++ D EVYC+ HVP GP
Sbjct: 32 FKCWICGTRLSLKTYHNNRNDNTDLEVYCAGHVPTPGP 69
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 172 CFRCNEIVYQVDRVGPLKDFTFFHSGC 252
CFRC Y D++GPLKD + FH GC
Sbjct: 5 CFRCKRPTYFNDKMGPLKDGSMFHKGC 31
>L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical
protein F42H10.3 protein.
Length = 335
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNN 428
FKC VCG L +K Y DK YC H PK + ++ R A N +N
Sbjct: 32 FKCTVCGMTLNMKNYKG-----YDKRPYCDPHYPKTVASVMADTPEMRRIAENTKNQSN 85
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 322 TKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSG-R 498
T T+ T ++S T +TP SEA ST ITT++ +E+ + T R G
Sbjct: 177 TTMVTSTPTTEKSSTTTTSTP--TSEATSTTTAMITTTSGTTENPTTTDCPTKVCRYGFH 234
Query: 499 PTVERPRV 522
PT+ +V
Sbjct: 235 PTIRNGKV 242
>U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical
protein ZK813.5 protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.2
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 303 NQHWTEDKEVYC--SSHVPKIG--PGHLDNSSVG-IRSALNVPKSNN---YVNEQIRGY- 455
N WT+ KEV C S P IG PG+ DNS V S + V N +E Y
Sbjct: 315 NDVWTKVKEVMCCRSYDPPTIGHMPGYRDNSDVSPASSVMTVVGGENGPRIKSEASPSYQ 374
Query: 456 IRNSHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPFHIAHALKQTELPESL 635
+R + P S + S+ Q+ + +P+T+ S PA + + +T P +
Sbjct: 375 LRPNWNPSPSVTSYESDPPSSVTQETN---LPITSIPPVSVPASANCTPSPSETPKPRAQ 431
Query: 636 PFGREEKPI 662
G+ +
Sbjct: 432 DAGKARSSV 440
>U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform b protein.
Length = 692
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 536 LSRDTPDYQYGRFDA-SALPHSTRLKANRASRKP 634
L +TP+ Q+G + SA+P + +LKAN+ +++P
Sbjct: 153 LLAETPNPQFGDYQCNSAMPIAAKLKANKINKRP 186
>U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform a protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 536 LSRDTPDYQYGRFDA-SALPHSTRLKANRASRKP 634
L +TP+ Q+G + SA+P + +LKAN+ +++P
Sbjct: 153 LLAETPNPQFGDYQCNSAMPIAAKLKANKINKRP 186
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = +1
Query: 139 KMYRPNFYESTCFRCNEIVYQV---DRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITS 309
K R + YE++ EI DR+ + T HS +VP P T T+
Sbjct: 212 KCPRGSIYEASDLDAEEIQLACSVDDRIPLFRTTTTTHSSLTAVPGTTEETSTEPETTTT 271
Query: 310 IGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTS 459
T+ T +T ++ T+ S +T TT+T S TS
Sbjct: 272 STTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTS 321
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA-ITTSTNR-SEDTSGTAM 471
T+T+ T T+ T S T TTP ++E+ ST P + +TTST S T+G +
Sbjct: 448 TVTT-SPSTSPVTSTVTSSSSSSTTVTTPT-STESTSTSPSSTVTTSTTAPSTSTTGPSS 505
Query: 472 SQN 480
S +
Sbjct: 506 SSS 508
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA-ITTSTNR-SEDTSGTAM 471
T+T+ T T+ T S T TTP ++E+ ST P + +TTST S T+G +
Sbjct: 448 TVTT-SPSTSPVTSTVTSSSSSSTTVTTPT-STESTSTSPSSTVTTSTTAPSTSTTGPSS 505
Query: 472 SQN 480
S +
Sbjct: 506 SSS 508
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWAS-EALSTCPKAITTSTNRSEDTSGTAMSQN 480
TS G T L+T S +T + P S +ST P A TTS + TSG + S
Sbjct: 505 TSSGPSTVSERTLST--TSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSG 562
Query: 481 CLRSGRPTV 507
+ R TV
Sbjct: 563 PSTASRSTV 571
>AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical
protein Y46G5A.10 protein.
Length = 732
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 456 IRNSHEPELSPIRATNGGASTRLQQGSYRVIPLTTST-GDSTPAPFHIAHALKQTELPES 632
+R HE P+ + +R+ + S R + TTST P P H+ ++
Sbjct: 359 LRKEHEIVQVPLHRSQSLRQSRISEHSKRSLGKTTSTVSTERPIPIHVVEETSSIDMDVV 418
Query: 633 LP 638
P
Sbjct: 419 FP 420
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 219 FEGLHLLS*WMFKCAVCGTKLTLKTYY 299
F+G +LL W+F CA CG + Y+
Sbjct: 123 FDGGYLLC-WVFGCAACGISMVTVKYF 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,050
Number of Sequences: 27780
Number of extensions: 413570
Number of successful extensions: 1204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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