Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30465.Seq
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.33 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.44 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +3

Query: 252 FKCAVCG----TKLTLKTYYNNQHWTEDKEVYCS 341
           + C VCG    TKLTLK +   QH+       C+
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCA 405


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 426 NYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPA 584
           NYVN+ +  Y     E + +PI+       + +++  Y V+     TGD +PA
Sbjct: 61  NYVNKGVT-YKHTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPLTGDLSPA 112


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 322 TKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTS 435
           T  Y +L T +         P WA      C  AITT+
Sbjct: 93  TLTYISLDTNRGGSPKLTPYPNWAQNKAGACGSAITTA 130


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 343 ATYQRSVRATWTTPQWASEALSTCPKAITTST 438
           A    S   T ++PQ +  + ST P A TTS+
Sbjct: 56  AQQHNSPSPTGSSPQHSGSSASTSPAARTTSS 87


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = +1

Query: 124 TQIVNKMYRPNFYESTCFRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEP 276
           T + +++ +   +      CNE   +  +V      ++F    LS PC  P
Sbjct: 23  TSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHP 73


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 123 SRHNYKLHLIHIDANYIWFF 64
           +RHN   +L H+D + + +F
Sbjct: 312 TRHNATCYLSHVDPDVVQYF 331


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 123 SRHNYKLHLIHIDANYIWFF 64
           +RHN   +L H+D + + +F
Sbjct: 18  TRHNATCYLSHVDPDVVQYF 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 400 ALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRV 522
           A +T    ITT+T  +  T+ T  + N  ++   T   P+V
Sbjct: 653 APATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQV 693


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 312 WTEDKEVYCSSHV 350
           WT+D++V CS+ +
Sbjct: 160 WTQDEDVICSTPI 172


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 312 WTEDKEVYCSSHV 350
           WT+D+++ CS+ +
Sbjct: 213 WTQDEDIICSTPI 225


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 491  PGDQRWSVHASPARELSRDTP 553
            PG+Q+ ++   P+R  +  TP
Sbjct: 1288 PGNQQQTIQTQPSRNNTYSTP 1308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,507
Number of Sequences: 438
Number of extensions: 5215
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)