Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30465.Seq
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    31   0.63 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    31   0.63 
At2g44760.1 68415.m05571 expressed protein                             30   1.5  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    29   3.4  
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    29   4.5  
At3g52170.1 68416.m05727 expressed protein                             28   5.9  
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ...    28   7.8  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At2g44760.1 68415.m05571 expressed protein 
          Length = 504

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 567 GDSTPAPFHIAHALKQTELPESL-PFGREE 653
           G+STP  +    ALK+  LPE+L  FG EE
Sbjct: 403 GESTPVVYLCTEALKRRNLPETLVSFGEEE 432


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = +2

Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQ 502
           Q   LL  R + +     Q    HQ++ Q+ Q+Q  +Q+  Q+ HQ QP       P  Q
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP-------PSQQ 164

Query: 503 RWSVHASPARELSRDTPDYQYGRFDASALPHST 601
           +    ++P  +  + TP  Q  R D S L + +
Sbjct: 165 Q-QQQSTPQHQ-QQPTPQQQPQRRDGSHLANGS 195


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 443 DQRIHQEQP*ARTVSD------PGDQRWSVHASPARE 535
           D+   QE P + TVSD      PG  RWS++  PA+E
Sbjct: 610 DKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAKE 646


>At3g52170.1 68416.m05727 expressed protein
          Length = 499

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 673 SKQSIGFSSR-PNGRLSGSSVCFKACAMWKGA 581
           S QS+ FSS  P G ++GS VC   C    G+
Sbjct: 126 SYQSLDFSSESPEGNVNGSQVCLDNCREVSGS 157


>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
           C +CG  + +  YY+ +    D ++YC+ + P
Sbjct: 83  CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,955
Number of Sequences: 28952
Number of extensions: 383963
Number of successful extensions: 1091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)