Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30463.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    51   1e-06
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHA 162
           ++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  E  
Sbjct: 5   LTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESN 64

Query: 163 DQVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLY 291
           D +E +  +   +    ++ + +E  VGW+       ++ L+Y
Sbjct: 65  DDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIY 107


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 177
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 178 ---ELNYAMDVYELNRRVNSSESIVGWW 252
              +++Y   +Y +  +V + E IVGW+
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWY 128


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 TASACHTKNMPIKSKRNLITRWMFTS 208
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 118 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 17
           PLL  SCP+ C+ LC        + P F+ K  D
Sbjct: 44  PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 138
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,550
Number of Sequences: 27780
Number of extensions: 363393
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)