Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30460.Seq
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 76 3e-14
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 72 6e-13
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 41 0.001
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 40 0.003
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 38 0.011
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 38 0.011
03_01_0249 - 1935355-1935827,1936129-1936330 34 0.11
11_06_0584 - 25220371-25222917 31 0.99
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 31 1.3
06_01_0611 + 4420873-4422207 30 2.3
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 5.3
01_01_0735 + 5730783-5733320 29 5.3
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 28 7.0
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 28 7.0
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 28 9.2
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 76.2 bits (179), Expect = 3e-14
Identities = 39/75 (52%), Positives = 51/75 (68%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 180
+T+ N A+KALIAA+YSG V++A NF G +NK+ ++LK P GKVP E+ DG V
Sbjct: 567 HTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVF 626
Query: 181 LTESNAIAYYVANES 225
ESNAIA YV + S
Sbjct: 627 --ESNAIARYVLSSS 639
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +1
Query: 16 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 195
N A+KALIAA+YSG V++ NF G +NK+ +FLK P GK+P E+ DG V ESN
Sbjct: 11 NKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVF--ESN 68
Query: 196 AIAYYV 213
AIA YV
Sbjct: 69 AIARYV 74
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
+ + QW +S +E+ + W+FP LG + + E A + L +L L+ HL + T+L
Sbjct: 662 AHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYL 721
Query: 432 VTERITCR---CHCLQYTAACFPARARPDVRSSLINVQRWFLTVAHQPQVSAVVGSLTLC 602
V +T C Y F + S +V+R+F T+ +QP V+G +
Sbjct: 722 VGHSVTLADIVMTCNLYMG--FARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQA 779
Query: 603 AAPPTYDPK 629
+ P K
Sbjct: 780 DSVPQVQKK 788
Score = 48.0 bits (109), Expect = 8e-06
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
+ + QW +S +E+ W++P LGI + + E A + L +L L+ HL + T+L
Sbjct: 101 AHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYL 160
Query: 432 VTERITCR---CHCLQYTAACFPARARPDVRSSLINVQRWFLTVAHQPQVSAVVGSLTLC 602
V +T C Y F S +V+R+F T+ +QP V+G +
Sbjct: 161 VGHSVTLADIVMTCNLYMG--FARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQA 218
Query: 603 AAPPTYDPK 629
+ P K
Sbjct: 219 ESVPPVQKK 227
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 71.7 bits (168), Expect = 6e-13
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Frame = +1
Query: 16 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 195
N A+KALIAA+Y+G V++ NF G +NK+ +FLK P GK+P E+ +G V ESN
Sbjct: 35 NKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVF--ESN 92
Query: 196 AIAYYVA----NESLRGGDL 243
AIA YVA N SL G L
Sbjct: 93 AIARYVARLKDNSSLCGSSL 112
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
S + QW +S +E+ W++P LG + E A + L +L L+ HL + T+L
Sbjct: 116 SHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYL 175
Query: 432 VTERITCR---CHCLQYTAACFPARARPDVRSSLINVQRWFLTVAHQPQVSAVVGSLTLC 602
V +T C Y F S +V+R+F T+ +QP V+G
Sbjct: 176 VGHSVTLADIVMTCNLYYG--FVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQA 233
Query: 603 AAPPTYDPK 629
+ P K
Sbjct: 234 ESVPPVQKK 242
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 41.1 bits (92), Expect = 0.001
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +1
Query: 37 LIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 213
L+ + +G + VA + GE N+S L + P GK+PAFE DG+V L ES AI YV
Sbjct: 18 LVCLEEAGASYELVAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYV 74
Query: 214 AN-----ESLRGGDLATQAV 258
+ LR G+L A+
Sbjct: 75 LRNYNKPDLLREGNLEESAM 94
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 31 KALIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 207
+ L+ + G D + V +F+ GE N S + +++ P GK+PA + DG ++L ES AIA
Sbjct: 17 RVLVCLEEVGADYELVTVDFLAGEQN-SPEHVERNPFGKIPALQ--DGDLVLFESRAIAK 73
Query: 208 YV 213
Y+
Sbjct: 74 YI 75
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 31 KALIAAQYSGTDVKVAPNFVFGET-NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 207
+ L+ + G D ++ + FG+ +K D L + P G+VPAF+ DG ++L ES AI
Sbjct: 17 RVLLCLEEVGADYEIV-DVDFGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICR 73
Query: 208 YV 213
Y+
Sbjct: 74 YI 75
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 31 KALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 210
+ L+ + G + +V P + +K + + P G+VPAFE DG + L ES AI+ Y
Sbjct: 17 RILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFE--DGDLTLFESRAISKY 74
Query: 211 VANESLRGGDLATQA 255
+ + G DL ++
Sbjct: 75 ILRK--HGSDLLRES 87
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +1
Query: 103 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQAVSGSGHHGL 282
+KS FLK P G+VPAF+ D + ES AI Y+ ++ G+ G G
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSGNKTLMGRKEDGAVGR 99
Query: 283 TANYCLLPALGSS 321
A + A G S
Sbjct: 100 AAIEKWIEAEGQS 112
>11_06_0584 - 25220371-25222917
Length = 848
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -2
Query: 457 HRQVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 278
H + +++ + R R P + R + +ST C C +PR K +AG S+++D
Sbjct: 381 HLRHQINIRKTARRRELPQKQHQHKLR--WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 YTYPENFRAYKALIAAQYSGTDVKV-APNFVFGETNKSEDFLKKFPAGKVPAFESADGKV 177
Y+Y + +++ IA G + + A N + GE + E F+K P VPA DG
Sbjct: 17 YSYWRSSCSHRVRIALNLKGLEYEYKAVNLLKGEHSDPE-FMKVNPMKFVPAL--VDGDA 73
Query: 178 LLTESNAIAYYVANE 222
++ +S AIA Y+ ++
Sbjct: 74 VIGDSYAIALYLEDK 88
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 515 FVADKRSAL-----VPDRRPPAASVGRRRLAHALC 604
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 118 FLKKFPAGKVPAFESADGK 174
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
>01_01_0735 + 5730783-5733320
Length = 845
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 78 TEFRIWRDQQVRRLLEEVSCRKSACIRKCRWKGA 179
T F +W D + + +E SC+K C+ C K A
Sbjct: 372 TYFHLWGDSRGAPMTDEESCKKD-CLSNCSCKAA 404
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 430 RKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLS 281
+K RVR PSST ++A+RS C + + + A+ SS LS
Sbjct: 425 KKARVRPSPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVTESSKLS 474
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 28.3 bits (60), Expect = 7.0
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = +3
Query: 372 SDLLAALKVLDGHLLTRTFLVTERITCRCHCLQYTAACFPARARPDVRSSLI-NVQRWFL 548
S+ AA LDG+L +RTFLV+ ++ + A R RS N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 549 TVAHQPQ-----VSAVVGSLTLCAAP 611
++A VSA VG + +P
Sbjct: 153 SIADYSDTLDEVVSAYVGKRGIGKSP 178
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 SRVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 431
+ V +W + +LP A L ++ K+ V+R KS L A G+L+ + F
Sbjct: 409 NNVARWGNLIGYIVLPFRIAMFHDPLEYIRQGKRTVDRKKSSLEAIFTYWSGNLIVKLFG 468
Query: 432 VTERITCRCH-CLQYTAACFPARARP 506
+ + CH L T F + P
Sbjct: 469 I-KTAAALCHGMLANTTLSFSSMVGP 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,758,221
Number of Sequences: 37544
Number of extensions: 485275
Number of successful extensions: 1495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -