Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30460.Seq
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 84  FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 176
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 10   PENFRAYKALIAAQYSGTDVKVA 78
            PE+F A  ALI+ Q  G  + VA
Sbjct: 1620 PEHFVASYALISNQCEGDSLNVA 1642


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 267 TARHGLGSQISSAETFIGNVVSDGIAFS*KHLSIGTFECRHFSGRK 130
           T  +G  S +          V DG+     + S+  F C ++ GRK
Sbjct: 345 TTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 390


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 267 TARHGLGSQISSAETFIGNVVSDGIAFS*KHLSIGTFECRHFSGRK 130
           T  +G  S +          V DG+     + S+  F C ++ GRK
Sbjct: 314 TTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 359


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 267 TARHGLGSQISSAETFIGNVVSDGIAFS*KHLSIGTFECRHFSGRK 130
           T  +G  S +          V DG+     + S+  F C ++ GRK
Sbjct: 365 TTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 410


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 267 TARHGLGSQISSAETFIGNVVSDGIAFS*KHLSIGTFECRHFSGRK 130
           T  +G  S +          V DG+     + S+  F C ++ GRK
Sbjct: 314 TTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,545
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)