Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30458.Seq
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.8  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    29   4.1  
06_01_1062 + 8594333-8594860                                           29   5.4  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    28   9.5  
06_01_0092 - 775290-775691                                             28   9.5  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 53  ITIHWPSFYNVV-TGKTLALPNLIALQH 133
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
            31538826-31539071,31539385-31539506,31539588-31540344,
            31540447-31540770,31540872-31541052,31541208-31541602,
            31541877-31541942,31542225-31542377,31542593-31542691,
            31542776-31542982,31543432-31543572,31543852-31544019,
            31544302-31544395,31544479-31544585,31545140-31545274,
            31545549-31545656,31545975-31546049,31546197-31546262,
            31546500-31546556,31546678-31546702,31546809-31546889,
            31546966-31547080,31547211-31547370,31547444-31547483,
            31547599-31547780,31547905-31548234
          Length = 1650

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 351  HSTLSRSILLIYKGFCRFRPIGXKMS*FNKNLSEF*QNINAYNLPFAIXXAQLLGRAIGA 172
            H  + RSIL     F    P+G  ++ F+K+L +  +N+  +   F    +QLL   +  
Sbjct: 1018 HDAMLRSILRAPMVFFHTNPLGRIINRFSKDLGDIDRNVAIFVNMFMAQISQLLSTFVLI 1077

Query: 171  GL 166
            G+
Sbjct: 1078 GI 1079


>06_01_1062 + 8594333-8594860
          Length = 175

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 513 GAPDLELDGESRRTWRE-XXGEESG 584
           G P+L+ DG  R  WRE   GEE G
Sbjct: 137 GGPELDGDGGERERWRELDSGEEEG 161


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 510 LGSDLVLYGTSTXKNLIRVMVHVVGHRPDRRF 415
           L   ++L+      +++ V VH+ G RPDRR+
Sbjct: 22  LAMSVMLFVEKVYMSVVLVGVHLFGRRPDRRY 53


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 173 RASSLLRQLAKGGCAARR 120
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,567
Number of Sequences: 37544
Number of extensions: 386777
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)