Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30456.Seq
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 115 2e-26
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 105 2e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 101 4e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 90 7e-19
04_01_0410 - 5411135-5411581 29 1.9
07_03_1151 + 24385272-24386543 28 4.5
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 115 bits (277), Expect = 2e-26
Identities = 69/135 (51%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGFLRS*FTMLKSWKS**CKTGS-TAQRSLMVSLRRSGS*FVERAQQLSI 391
S+KKTRH LPN F + + + A+ + VS ++ VERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKE-IVERAAQLDI 118
Query: 392 RVTNAAARLRSQENE 436
VTN ARLRSQE+E
Sbjct: 119 VVTNKLARLRSQEDE 133
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 363
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEI 109
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 105 bits (252), Expect = 2e-23
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +2
Query: 23 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 202
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 203 IGYGSNKKTRHMLPNGF 253
IGYGS+KKTRH LPN F
Sbjct: 378 IGYGSDKKTRHYLPNKF 394
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNR 309
Y P K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 101 bits (241), Expect = 4e-22
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 215 SNKKTRHMLPNGF 253
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 363
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 109
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 90.2 bits (214), Expect = 7e-19
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = +2
Query: 131 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFLRS*FTMLKSWKS**CKTG 310
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F + + +
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 311 S-TAQRSLMVSLRRSGS*FVERAQQLSIRVTNAAARLRSQENE 436
+ A+ + VS ++ VERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKE-IVERAAQLDIVVTNKLARLRSQEDE 200
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +1
Query: 235 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 363
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 176
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>04_01_0410 - 5411135-5411581
Length = 148
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 VHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSP-AAQHQSDECGRSPPLP 426
+HN E E M +NR + + + +KK + K P +AQ C + P P
Sbjct: 81 MHNFLEKETTMPRNRYWRTSVKSPIPAKKSEQPAQKKPSSAQKSKKVCRKKPKTP 135
>07_03_1151 + 24385272-24386543
Length = 423
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 363 SWKEPSSSASE*RMRPLASAPRRMNKYNC 449
S+ P+S +S+ + +P A+AP + +Y C
Sbjct: 268 SYHSPNSISSKKKQQPRAAAPAKRTRYEC 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,316
Number of Sequences: 37544
Number of extensions: 253253
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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