Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30456.Seq
(478 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 182 2e-48
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 5.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 5.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.0
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 182 bits (443), Expect = 2e-48
Identities = 92/134 (68%), Positives = 100/134 (74%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 214
MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1 MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60
Query: 215 SNKKTRHMLPNGFLRS*FTMLKSWKS**CKTGSTAQRSLMVSLRRSGS*FVERAQQLSIR 394
SNKKTRHMLP GF + +K + + + VERAQQLSIR
Sbjct: 61 SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120
Query: 395 VTNAAARLRSQENE 436
VT A+ARLRSQENE
Sbjct: 121 VTYASARLRSQENE 134
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 303 KQEVLRRDRSWCLFEEAEAD 362
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.6 bits (41), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 312 LPVLHHQDFQLFNI 271
LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.6 bits (41), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 312 LPVLHHQDFQLFNI 271
LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,224
Number of Sequences: 438
Number of extensions: 2511
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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