Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30455.Seq
         (769 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537439-1|CAD97681.1|  225|Homo sapiens hypothetical protein pr...    98   3e-20
BC063614-1|AAH63614.1|  225|Homo sapiens phosphoserine phosphata...    98   3e-20
AK223508-1|BAD97228.1|  225|Homo sapiens phosphoserine phosphata...    98   3e-20
Y10275-1|CAA71318.1|  225|Homo sapiens L-3-phosphoserine phospha...    98   3e-20
BT006661-1|AAP35307.1|   91|Homo sapiens phosphoserine phosphata...    42   0.003
AJ001612-1|CAA04865.1|   72|Homo sapiens L-3-phosphoserine-phosp...    42   0.003
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    35   0.28 
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    35   0.28 
BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.        34   0.49 
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    34   0.64 
AF016694-1|AAB71687.1|  246|Homo sapiens small intestinal mucin ...    31   3.4  
AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E...    31   4.5  
AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E...    31   4.5  
AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion degrad...    31   4.5  

>BX537439-1|CAD97681.1|  225|Homo sapiens hypothetical protein
           protein.
          Length = 225

 Score = 98.3 bits (234), Expect = 3e-20
 Identities = 47/90 (52%), Positives = 64/90 (71%)
 Frame = +1

Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
           V+ ++  +LF +AD VCFDVDSTVI++EGIDELAK CG  D V  +T  AMGG + F+ A
Sbjct: 2   VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61

Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
           L +RL +I+P+  Q++  I + P  LTPGI
Sbjct: 62  LTERLALIQPSREQVQRLIAEQPPHLTPGI 91



 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQVLFSMVNTLGFDENEPT 689
           LV  L ER V V+L+SGGFRS++E VA +LNIP  N+FANRL+  F+     GFDE +PT
Sbjct: 94  LVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFN-GEYAGFDETQPT 152

Query: 690 SRS 698
           + S
Sbjct: 153 AES 155


>BC063614-1|AAH63614.1|  225|Homo sapiens phosphoserine phosphatase
           protein.
          Length = 225

 Score = 98.3 bits (234), Expect = 3e-20
 Identities = 47/90 (52%), Positives = 64/90 (71%)
 Frame = +1

Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
           V+ ++  +LF +AD VCFDVDSTVI++EGIDELAK CG  D V  +T  AMGG + F+ A
Sbjct: 2   VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61

Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
           L +RL +I+P+  Q++  I + P  LTPGI
Sbjct: 62  LTERLALIQPSREQVQRLIAEQPPHLTPGI 91



 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQVLFSMVNTLGFDENEPT 689
           LV  L ER V V+L+SGGFRS++E VA +LNIP  N+FANRL+  F+     GFDE +PT
Sbjct: 94  LVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFN-GEYAGFDETQPT 152

Query: 690 SRS 698
           + S
Sbjct: 153 AES 155


>AK223508-1|BAD97228.1|  225|Homo sapiens phosphoserine phosphatase
           variant protein.
          Length = 225

 Score = 98.3 bits (234), Expect = 3e-20
 Identities = 47/90 (52%), Positives = 64/90 (71%)
 Frame = +1

Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
           V+ ++  +LF +AD VCFDVDSTVI++EGIDELAK CG  D V  +T  AMGG + F+ A
Sbjct: 2   VSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61

Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
           L +RL +I+P+  Q++  I + P  LTPGI
Sbjct: 62  LTERLALIQPSREQVQRLIAEQPPHLTPGI 91



 Score = 72.5 bits (170), Expect = 2e-12
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQVLFSMVNTLGFDENEPT 689
           LV  L ER V V+L+SGGFRS++E VA +LNIP  N+FANRL+  F+     GFDE +PT
Sbjct: 94  LVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKSYFN-GEYAGFDETQPT 152

Query: 690 SRS 698
           + S
Sbjct: 153 AES 155


>Y10275-1|CAA71318.1|  225|Homo sapiens L-3-phosphoserine
           phosphatase protein.
          Length = 225

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 46/90 (51%), Positives = 64/90 (71%)
 Frame = +1

Query: 235 VAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEA 414
           ++ ++  +LF +AD VCFDVDSTVI++EGIDELAK CG  D V  +T  AMGG + F+ A
Sbjct: 2   ISHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAA 61

Query: 415 LKKRLDIIRPNVGQIREFIEKFPVRLTPGI 504
           L +RL +I+P+  Q++  I + P  LTPGI
Sbjct: 62  LTERLALIQPSREQVQRLIAEQPPHLTPGI 91



 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = +3

Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQVLFSMVNTLGFDENEPT 689
           LV  L ER V V+L+SGGFRS++E VA +LNIP  N+FANRL+  F+     GFDE +PT
Sbjct: 94  LVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFN-GEYAGFDETQPT 152

Query: 690 SRS 698
           + S
Sbjct: 153 AES 155


>BT006661-1|AAP35307.1|   91|Homo sapiens phosphoserine
           phosphatase-like protein.
          Length = 91

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = +1

Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGI 324
           R ++ ++  +LF +AD VCFDVDSTVI +EGI
Sbjct: 24  RMISHSELRKLFYSADAVCFDVDSTVISEEGI 55


>AJ001612-1|CAA04865.1|   72|Homo sapiens
           L-3-phosphoserine-phosphatase homologue protein.
          Length = 72

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = +1

Query: 229 RDVAPTDCPELFRTADCVCFDVDSTVIQDEGI 324
           R ++ ++  +LF +AD VCFDVDSTVI +EGI
Sbjct: 24  RMISHSELRKLFYSADAVCFDVDSTVISEEGI 55


>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
            protein.
          Length = 4262

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
            PP A   S+ TS+P   +   +SMP S  TV S+   T S    ++   V   S+  S+P
Sbjct: 3263 PPTAEGTSMPTSTPSEGSTPLTSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSP 3322

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS     +S    P
Sbjct: 3323 PIADGTSMPTSTYSEGSTP 3341



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 395 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSV-GATSR*ST 219
           LP  A A S+LTS+    +   ++MP S + V S+   T S +  +S   V  A+   S+
Sbjct: 374 LPTTAEATSMLTSTLSEGSTPLTNMPVSTILVASSEASTTSTIPVDSKTFVTTASEASSS 433

Query: 218 PVRASSTS 195
           P  A  TS
Sbjct: 434 PTTAEDTS 441



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
            P  +   S+ TS+P   +   +SMP S M V ++   T SA  ++ S     +T   S+P
Sbjct: 2202 PTTSEGTSMPTSTPSEGSTPFTSMPVSTMPVVTSEASTLSATPVDTSTPVTTSTEATSSP 2261

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS      S    P
Sbjct: 2262 TTAEGTSIPTSTLSEGTTP 2280



 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
            P  +   S+ TS+P   +   +SMP S   V S+  +T SA  ++ S     +T   S+P
Sbjct: 906  PTTSEGTSMPTSTPGEGSTPLTSMPDSTTPVVSSEARTLSATPVDTSTPVTTSTEATSSP 965

Query: 215  VRASSTS 195
              A  TS
Sbjct: 966  TTAEGTS 972



 Score = 30.3 bits (65), Expect = 7.9
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
            P  A   S+ TS+P       +S+P S  TV S+   T S  L ++   V   S+  S+P
Sbjct: 1908 PTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPVTTYSQASSSP 1967

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS     +S    P
Sbjct: 1968 TTADGTSMPTPAYSEGSTP 1986


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
            protein.
          Length = 4493

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
            PP A   S+ TS+P   +   +SMP S  TV S+   T S    ++   V   S+  S+P
Sbjct: 3263 PPTAEGTSMPTSTPSEGSTPLTSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSP 3322

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS     +S    P
Sbjct: 3323 PIADGTSMPTSTYSEGSTP 3341



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 395 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSV-GATSR*ST 219
           LP  A A S+LTS+    +   ++MP S + V S+   T S +  +S   V  A+   S+
Sbjct: 374 LPTTAEATSMLTSTLSEGSTPLTNMPVSTILVASSEASTTSTIPVDSKTFVTTASEASSS 433

Query: 218 PVRASSTS 195
           P  A  TS
Sbjct: 434 PTTAEDTS 441



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
            P  +   S+ TS+P   +   +SMP S M V ++   T SA  ++ S     +T   S+P
Sbjct: 2202 PTTSEGTSMPTSTPSEGSTPFTSMPVSTMPVVTSEASTLSATPVDTSTPVTTSTEATSSP 2261

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS      S    P
Sbjct: 2262 TTAEGTSIPTSTLSEGTTP 2280



 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV-LNNSGQSVGATSR*STP 216
            P  +   S+ TS+P   +   +SMP S   V S+  +T SA  ++ S     +T   S+P
Sbjct: 906  PTTSEGTSMPTSTPGEGSTPLTSMPDSTTPVVSSEARTLSATPVDTSTPVTTSTEATSSP 965

Query: 215  VRASSTS 195
              A  TS
Sbjct: 966  TTAEGTS 972



 Score = 30.3 bits (65), Expect = 7.9
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392  PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
            P  A   S+ TS+P       +S+P S  TV S+   T S  L ++   V   S+  S+P
Sbjct: 1908 PTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPVTTYSQASSSP 1967

Query: 215  VRASSTSRTAGCFSNCKEP 159
              A  TS     +S    P
Sbjct: 1968 TTADGTSMPTPAYSEGSTP 1986


>BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.
          Length = 257

 Score = 34.3 bits (75), Expect = 0.49
 Identities = 24/69 (34%), Positives = 40/69 (57%)
 Frame = -3

Query: 362 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAG 183
           TSSP   + +SSS PSS  +  S+S  + S+  ++S  S  ++S  S+P  +SS+S ++ 
Sbjct: 89  TSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSS--SSP-SSSSSSSSSS 145

Query: 182 CFSNCKEPS 156
             S+   PS
Sbjct: 146 PSSSSSSPS 154



 Score = 33.5 bits (73), Expect = 0.85
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = -3

Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
           +S+ S   SS  P +  SSS PSS  +  S S  + S+  + S  +  ++S  S+P  +S
Sbjct: 62  SSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSP-SSS 120

Query: 203 STSRTAGCFSNCKEPS 156
           S+S ++   S+   PS
Sbjct: 121 SSSSSSSPSSSSSSPS 136



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/75 (30%), Positives = 41/75 (54%)
 Frame = -3

Query: 380 SAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASS 201
           S+ S  +SSP   + +SSS PSS  +  S+S  + S+  ++S  S  ++S  S+   +SS
Sbjct: 108 SSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSSSSS 165

Query: 200 TSRTAGCFSNCKEPS 156
           +  ++   S+   PS
Sbjct: 166 SPSSSSPSSSGSSPS 180



 Score = 31.1 bits (67), Expect = 4.5
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = -3

Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
           +S+ S  +SSP   N +SSS  SS  +  S+S  + S+  ++S  S  ++S  S+P  +S
Sbjct: 93  SSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSS--SSSSPSSSSSSSSSSPSSSS 150

Query: 203 STSRTAGCFSNCKEPS 156
           S+  ++   S+    S
Sbjct: 151 SSPSSSSSSSSSSSSS 166



 Score = 30.3 bits (65), Expect = 7.9
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -3

Query: 371 SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSR 192
           S + SS  P + +SSS PSS  +  S S  + S+   +S  S  + S  S+   +S +S 
Sbjct: 48  SSILSSSIPSSSSSSSSPSSSHSSSSPS-SSHSSSSPSSSSSTSSPSSSSSSSSSSPSSS 106

Query: 191 TAGCFSNCKEPS 156
            +   S+   PS
Sbjct: 107 NSSSSSSSSSPS 118


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 23/76 (30%), Positives = 39/76 (51%)
 Frame = -3

Query: 383 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRAS 204
           +S+ S   SS  P +  SSS PSS  +  S S  + S+  ++   S  ++S  S+   +S
Sbjct: 62  SSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSS 121

Query: 203 STSRTAGCFSNCKEPS 156
           S+S ++   S+   PS
Sbjct: 122 SSSSSSSPSSSSSSPS 137



 Score = 33.1 bits (72), Expect = 1.1
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = -3

Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVR 210
           P +S+ S  +SSP   N +SSS  SS  +  S+S  + S+  ++S  S  ++S  S+P  
Sbjct: 92  PSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSS--SSSSPSSSSSSSSSSPSS 149

Query: 209 ASSTSRTAGCFSNCKEPS 156
           +SS+  ++   S+    S
Sbjct: 150 SSSSPSSSSSSSSSSSSS 167



 Score = 32.3 bits (70), Expect = 2.0
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -3

Query: 371 SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTSR 192
           S + SS  P + +SSS PSS  +  S S    S+  ++S  +   +S  S+   +S +S 
Sbjct: 48  SSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSS 107

Query: 191 TAGCFSNCKEPS 156
            +   S+   PS
Sbjct: 108 NSSSSSSSSSPS 119



 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/75 (30%), Positives = 41/75 (54%)
 Frame = -3

Query: 380 SAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASS 201
           S+ S  +SSP   + +SSS PSS  +  S+S  + S+  ++S  S  ++S  S+   +SS
Sbjct: 109 SSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS--SSSSSSSS 166

Query: 200 TSRTAGCFSNCKEPS 156
           +  ++   S+   PS
Sbjct: 167 SPSSSSPSSSGSSPS 181



 Score = 30.3 bits (65), Expect = 7.9
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -3

Query: 383 ASAVSLLTSSPFPQNLASSSMPSS--CMTVESTSKQTQSAVLNNSGQSVGATSR*STPVR 210
           +S  S  +SS  P +  SSS PSS    +  S+S  T S   ++S  S  + S  ++   
Sbjct: 53  SSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSS 112

Query: 209 ASSTSRTAGCFSNCKEPS 156
           +SS+S ++   S+   PS
Sbjct: 113 SSSSSPSSSSSSSSSSPS 130



 Score = 30.3 bits (65), Expect = 7.9
 Identities = 30/106 (28%), Positives = 50/106 (47%)
 Frame = -3

Query: 473 SMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES 294
           S +S   P+     SS    +S N      +S+ S  +SS      +SSS PSS  +  S
Sbjct: 85  SSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSS 144

Query: 293 TSKQTQSAVLNNSGQSVGATSR*STPVRASSTSRTAGCFSNCKEPS 156
           +S  + S+  ++S  S  ++S  S+P  +S +S  +   S+   PS
Sbjct: 145 SSPSSSSSSPSSSSSSSSSSS--SSPSSSSPSSSGSSPSSSNSSPS 188


>AF016694-1|AAB71687.1|  246|Homo sapiens small intestinal mucin
           MUC3 protein.
          Length = 246

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR-*STP 216
           PP A   S+ TS+P   +   + MP S   V S+   T S    ++   V   S+  S+P
Sbjct: 22  PPTAEGTSMPTSTPSEGSTPLTRMPVSTTMVASSETSTLSTTPADTSTPVTTYSQASSSP 81

Query: 215 VRASSTSRTAGCFSNCKEP 159
             A  TS     +S    P
Sbjct: 82  TTADGTSMPTSTYSEGGTP 100


>AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E4B
           (UFD2 homolog, yeast) protein.
          Length = 1302

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = -3

Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
           + V  P  +S VS+L+SSP P  LASS      +   S+ ++  S        S  ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389

Query: 227 *STPVRASSTSRTAGCFSN 171
             + +R S +   +G  SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408


>AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E4B
           (UFD2 homolog, yeast) protein.
          Length = 1302

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = -3

Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
           + V  P  +S VS+L+SSP P  LASS      +   S+ ++  S        S  ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389

Query: 227 *STPVRASSTSRTAGCFSN 171
             + +R S +   +G  SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408


>AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion
           degradation protein 2 protein.
          Length = 1302

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = -3

Query: 407 WNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQSVGATSR 228
           + V  P  +S VS+L+SSP P  LASS      +   S+ ++  S        S  ATSR
Sbjct: 333 YTVTHPWASSGVSILSSSPSPPALASS---PQAVPASSSRQRPSSTGPPLPPASPSATSR 389

Query: 227 *STPVRASSTSRTAGCFSN 171
             + +R S +   +G  SN
Sbjct: 390 RPSSLRISPSLGASGGASN 408


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,168,278
Number of Sequences: 237096
Number of extensions: 2132890
Number of successful extensions: 4945
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4896
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)