Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30454.Seq
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    32   0.074
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    31   0.23 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    30   0.39 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.69 
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   4.8  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   4.8  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   4.8  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   4.8  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   4.8  

>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 628 GFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFL 449
           G P+     W  FY L  F QK N   S +TR    + FF   LY W    S++  E   
Sbjct: 205 GVPY-FSTAWFQFY-LKLFSQKDNVSSSDLTR----WFFFYTLLYPWIALVSAFVAETMT 258

Query: 448 LTC 440
           L C
Sbjct: 259 LCC 261


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 655 FLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKKTLYRWP 485
           FL P Y  N  P     +  NFY  ++F +K+        +S + FA+   T   WP
Sbjct: 167 FLPPLYTHNHDPVD-HKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAYLPFTAPHWP 222


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 703 IGYLNLMLPXNAVVKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 539
           IG+   ++     +++FL P    +G  +  +D W++FY    E DW     N G + +
Sbjct: 325 IGFRQYIMRLFQTLRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 362  VFVYPYEPTPKESEPFKSVVPDNKPFGYP 276
            + VY + P   +SE F +VV DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +3

Query: 360 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 494
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 274 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 453
           +G  +  L  + + N +++   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 203 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 66
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 203 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 66
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 323 EPFKSVVPDNKPFGYPFDRPVLP 255
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,750
Number of Sequences: 5004
Number of extensions: 57139
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)