Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30454.Seq
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.13 
03_05_0977 + 29355824-29357056                                         30   1.7  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   5.1  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   5.1  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    28   6.7  
05_05_0018 - 21547649-21547875,21547973-21548187,21548831-215490...    28   8.8  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   8.8  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 325 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 465
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 217 DLLEEHVRLFEVLGRTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 366
           D+L   ++LF  L      N  PNG L S +TD   + S+  G  G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 365 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 267
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 348 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 476
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
 Frame = -2

Query: 425 TMPSRLMLPKGTYDGFPFQLFVFVYPYEP------TPKESEPFKSVVPDNKPFGYPFDRP 264
           T  SR  LP  T D FP    +   P  P      TP  +       PD K    P  RP
Sbjct: 283 TTASRRSLPSMTSDFFPPVAAIAAPPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRP 342

Query: 263 VLPSTS 246
           V PS +
Sbjct: 343 VQPSNA 348


>05_05_0018 -
           21547649-21547875,21547973-21548187,21548831-21549096,
           21549534-21549657,21549946-21550041,21550179-21550294,
           21550374-21550455,21550574-21550728,21550819-21551001,
           21551114-21551305,21551389-21551564,21551676-21551729,
           21552076-21552147,21552255-21552582
          Length = 761

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 703 IGYLNLMLPXNAVVKMFLGPKYDENGFPFSLED 605
           IG  ++  P   V  +F+ P  +E+G P +LED
Sbjct: 168 IGLYDVQGPIPVVKNVFIPPDTEEDGLPVALED 200


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 450
           G TD+ G D  G+  +G  +   +K   S  PLG  ++    V+  LN+SV
Sbjct: 55  GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,579
Number of Sequences: 37544
Number of extensions: 340203
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)