Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30454.Seq
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               31   0.73 
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   29   3.9  
SB_28426| Best HMM Match : Sushi (HMM E-Value=7)                       29   3.9  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   5.2  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   5.2  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 673 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTD 521
           N  V ++  PK  ++  P S+ D WM+ +E   FV+K+N        S TD
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNMQAVLCASSHTD 295


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 276
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
 Frame = -3

Query: 631 NGFPFSLEDNWMNFYELDWFVQKV-----NPGQSQITRSSTDFAFFKKTLYRWP-KSTSS 470
           N     +ED     YE DW+V KV       G++ +T  S      +   +RWP +    
Sbjct: 598 NELALKVEDFVAAAYEGDWYVGKVQQIDQEDGEALVTFMSRSGTTLQSFSFRWPAREDVI 657

Query: 469 WTKERFLLTCSTP 431
           W K   +L    P
Sbjct: 658 WIKRDMILCVIEP 670


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 350 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPSTSNNLTCSSRRSWSTMKENYSP 186
           P  PTP+ S P +   P +KP  +P   P      +    + R   ST  +N  P
Sbjct: 130 PQHPTPQHSPPIRKQTPPSKP--HPSPTPAQAPPHSRPVAAKRPMPSTPDQNPCP 182


>SB_28426| Best HMM Match : Sushi (HMM E-Value=7)
          Length = 181

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -2

Query: 263 VLPSTSNN-LTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKR----TLTIT 99
           VLP   N  +TC SRR ++T     S +YL  LT+  +   YN  +    R     LT+ 
Sbjct: 41  VLPGLYNTRVTCGSRR-YNTRVTCGSRVYLVLLTV--LPGLYNTRVTCDSRMYLVLLTVL 97

Query: 98  --VYNSRISC 75
             +YN+R++C
Sbjct: 98  PGLYNTRVTC 107


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = -2

Query: 263 VLPSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSR 84
           VL + S N +  SR ++ T+ +NYS +   +LT   + +NY+ L   SK  LT++     
Sbjct: 12  VLNTLSKNYSTLSR-NYLTLSKNYSTLSKNYLT---LSKNYSTL---SKNYLTLSKNYLT 64

Query: 83  ISCEYVKTVANVI 45
           +S  Y+    N +
Sbjct: 65  LSKNYLTLSKNYL 77



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -2

Query: 248 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 69
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 68  VKTVANVI 45
           +    N +
Sbjct: 56  LTLSKNYL 63


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = -2

Query: 263 VLPSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSR 84
           VL + S N +  SR ++ T+ +NYS +   +LT   + +NY+ L   SK  LT++     
Sbjct: 12  VLNTLSKNYSTLSR-NYLTLSKNYSTLSKNYLT---LSKNYSTL---SKNYLTLSKNYLT 64

Query: 83  ISCEYVKTVANVI 45
           +S  Y+    N +
Sbjct: 65  LSKNYLTLSKNYL 77



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -2

Query: 248 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 69
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 68  VKTVANVI 45
           +    N +
Sbjct: 56  LTLSKNYL 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,347
Number of Sequences: 59808
Number of extensions: 409018
Number of successful extensions: 1023
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)