Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30454.Seq
(735 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D88613-1|BAA13651.1| 436|Homo sapiens hGCMa protein. 32 2.5
BC096288-1|AAH96288.1| 436|Homo sapiens glial cells missing hom... 32 2.5
AL512347-2|CAI14905.1| 436|Homo sapiens glial cells missing hom... 32 2.5
AB047819-1|BAB18039.1| 436|Homo sapiens chorion-specific transc... 32 2.5
AB041714-1|BAA94757.1| 436|Homo sapiens chorion-specific transc... 32 2.5
AB026493-1|BAA77250.2| 436|Homo sapiens GCM motif protein protein. 32 2.5
CR533556-1|CAG38587.1| 789|Homo sapiens TAX1BP1 protein. 30 7.5
BC050358-1|AAH50358.1| 789|Homo sapiens Tax1 (human T-cell leuk... 30 7.5
BC006827-1|AAH06827.1| 199|Homo sapiens UBE2Q2 protein protein. 30 9.9
>D88613-1|BAA13651.1| 436|Homo sapiens hGCMa protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>BC096288-1|AAH96288.1| 436|Homo sapiens glial cells missing
homolog 1 (Drosophila) protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>AL512347-2|CAI14905.1| 436|Homo sapiens glial cells missing
homolog 1 (Drosophila) protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>AB047819-1|BAB18039.1| 436|Homo sapiens chorion-specific
transcription factor GCMa protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>AB041714-1|BAA94757.1| 436|Homo sapiens chorion-specific
transcription factor GCMa protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>AB026493-1|BAA77250.2| 436|Homo sapiens GCM motif protein protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 254 STSNNL 237
+ + NL
Sbjct: 358 NPAGNL 363
>CR533556-1|CAG38587.1| 789|Homo sapiens TAX1BP1 protein.
Length = 789
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 571 VQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFLLTCSTP 431
+Q NP SQ TR D AF+ + R P SW E ++ CS P
Sbjct: 633 LQYGNPYASQETRDGADGAFYPDEIQRPPVRVPSWGLEDNVV-CSQP 678
>BC050358-1|AAH50358.1| 789|Homo sapiens Tax1 (human T-cell
leukemia virus type I) binding protein 1 protein.
Length = 789
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 571 VQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFLLTCSTP 431
+Q NP SQ TR D AF+ + R P SW E ++ CS P
Sbjct: 633 LQYGNPYASQETRDGADGAFYPDEIQRPPVRVPSWGLEDNVV-CSQP 678
>BC006827-1|AAH06827.1| 199|Homo sapiens UBE2Q2 protein protein.
Length = 199
Score = 29.9 bits (64), Expect = 9.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 299 DNKPFGYPFDRPVLPSTSNNLTCSSRRSWSTM 204
DN PF PF R VLP S L S+ W M
Sbjct: 161 DNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNM 192
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,414,953
Number of Sequences: 237096
Number of extensions: 1950905
Number of successful extensions: 3905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3905
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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