Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30454.Seq
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   1.0  
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    30   1.8  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.2  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   7.4  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 325 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 441
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 344 EPTPKESEPFKSVVPDNKPFGYPFDRPVLPSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 165
           EPT K    F    P N P    F R +L  T NN+T      W   K+N  P  +T L+
Sbjct: 743 EPTFKTGG-FGFAFPKNSPLTGEFSRAILNLTQNNVTQQIEDRWFP-KKNDCPDPMTALS 800

Query: 164 IHQI 153
            +++
Sbjct: 801 SNRL 804


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 304  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 450
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 325 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 441
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,591
Number of Sequences: 28952
Number of extensions: 290206
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)