Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30453.Seq
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   110   3e-25
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   110   3e-25
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   1.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   5.4  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  110 bits (264), Expect = 3e-25
 Identities = 53/80 (66%), Positives = 60/80 (75%)
 Frame = +2

Query: 17  MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 197 TGRVYNVTAHALGVIVNKRV 256
           TG VYNVT  ++GV++ K V
Sbjct: 61  TGVVYNVTQSSVGVLIYKVV 80



 Score =  103 bits (246), Expect = 4e-23
 Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +1

Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142

Query: 442 -GTEKPVLLAPIPYE 483
               +PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  110 bits (264), Expect = 3e-25
 Identities = 53/80 (66%), Positives = 60/80 (75%)
 Frame = +2

Query: 17  MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 197 TGRVYNVTAHALGVIVNKRV 256
           TG VYNVT  ++GV++ K V
Sbjct: 61  TGVVYNVTQSSVGVLIYKVV 80



 Score =  102 bits (245), Expect = 5e-23
 Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +1

Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142

Query: 442 -GTEKPVLLAPIPYE 483
               +PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -3

Query: 456 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 292
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 291 TDIDALRYN 265
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 129 SPTLYTFMYVESGIVPCVRNLRANKSLVPXR*PLEFVIF 13
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 88  YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 192
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,653
Number of Sequences: 5004
Number of extensions: 56223
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)