Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30453.Seq
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 114 7e-26
10_08_0310 - 16669565-16669822,16670558-16670794 111 5e-25
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 30 1.8
01_06_1794 - 39919363-39920025 29 3.2
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 4.2
06_03_1007 + 26869731-26870429,26871262-26871387 29 4.2
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 5.6
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 7.4
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 7.4
09_02_0036 + 3217163-3217584,3217752-3218322 28 9.7
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 9.7
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 9.7
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 114 bits (275), Expect = 7e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYRS-ASISVLSMSSTPSADKTSLRESK 346
TGRV+NVT A+GV +NK+V + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 68.1 bits (159), Expect = 7e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYEFV 489
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 111 bits (268), Expect = 5e-25
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 17 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 197 TGRVYNVTAHALGVIVNKRVAEGLYR 274
TGRV+NVT A+GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = +1
Query: 262 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 441
RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 442 GTEKPVLLAPIPYEFV 489
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 608 NVVTGKXLALPNLIXLQHIPP-FRPAGVI 691
N +TG+ +ALP++I ++H+ P F +G I
Sbjct: 171 NPITGEQIALPSVITIEHVNPIFNESGAI 199
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 337 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 474
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 124 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 225
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 236 VIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 391
V+V EG Y S + + S S +AD + RG R+PR ARP
Sbjct: 55 VVVEVEEEEG-YESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 116 YKVGDIVDIRGNGAVQKGMPHKVY 187
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 364 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 492
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 124 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 219
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 581 ITIHWPSFYNVV-TGKXLALPNLIXLQH 661
I+ W F N+V +G L++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 371 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 478
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 301 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 408
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,911
Number of Sequences: 37544
Number of extensions: 425476
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -