Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30453.Seq
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   116   1e-26
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   1.6  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    29   3.8  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  116 bits (280), Expect = 1e-26
 Identities = 54/80 (67%), Positives = 62/80 (77%)
 Frame = +2

Query: 17  MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 196
           MTNSKG R GTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 197 TGRVYNVTAHALGVIVNKRV 256
           TGR++NVT  A+G+IVNKRV
Sbjct: 61  TGRIFNVTRGAVGIIVNKRV 80



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 45/81 (55%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
 Frame = +1

Query: 256 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH 432
           RG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH
Sbjct: 81  RGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAH 140

Query: 433 -IVSGTEKPVLLAPIPYEFVA 492
            + +   +P LLAP+ +E VA
Sbjct: 141 TVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 201 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 64
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 560  LGTGPPLEXXXXXXFLKNFIGLYATNSYGIGASKTGFSVPL 438
            +GTG PL          + +G  A  ++GIG +  GFS PL
Sbjct: 918  IGTGQPLPPTSVVSDSTSSLGRPAAPAFGIGRAPPGFSEPL 958


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 118 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 255
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 394 NLKRQPAPPKAAHIVSGTE 450
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 459 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 373
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 312 GVLDMLNT-DIDALRYNPSATRLLTITPRA*AVTLYTRPVFPWYTLCGI 169
           G+LD   T DID L+ N  + +L  +     A T +T  +  W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 292 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 468
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 469 PI 474
           P+
Sbjct: 419 PV 420


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 459 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 373
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,347
Number of Sequences: 27780
Number of extensions: 335611
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)