Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30453.Seq
(788 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.4
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 23 2.4
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.2
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.7
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 5.7
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 5.7
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 5.7
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 7.5
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 9.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.9
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 9.9
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.9
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 9.9
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 459 DGFLSSTDDVGSFRGSW 409
DG SS D GS GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/52 (17%), Positives = 19/52 (36%)
Frame = -2
Query: 208 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQV 53
H L V + CT+ + + + H++ +SS+ P +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 596 PSFYNVVTGKXLALPNLIXLQHIPPFRPAG 685
P +YN++ + + +P I + PP RP G
Sbjct: 333 PLYYNIINIEQIPVPVPIYCGNFPP-RPMG 361
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 136 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 234
R Q+ + + Y WK+RSR + + SR
Sbjct: 45 REQKSYKNENSYRKYRETWKERSRDRTERERSR 77
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.8 bits (44), Expect = 7.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 619 SHDVVKRRPVNCNTTHYRANWVPGP 545
S + K++P +C+T YR V P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 9.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 142 DVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 32
++YN S+ + ++RGE S+ + VP +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 145 RQWCSSKGYATQSIPWKDRSRV 210
R C GY +SI W+ +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 629 LALPNLIXLQHIPPFRPA 682
L + NL+ L HIP PA
Sbjct: 83 LQVANLLRLFHIPQISPA 100
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 9.9
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1
Query: 53 PWCRXGNPW 27
PW GNPW
Sbjct: 135 PWRTCGNPW 143
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 9.9
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1
Query: 53 PWCRXGNPW 27
PW GNPW
Sbjct: 188 PWRTCGNPW 196
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 629 LALPNLIXLQHIPPFRPA 682
L + NL+ L HIP PA
Sbjct: 173 LQVANLLRLFHIPQISPA 190
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,640
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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