Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30451.Seq
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 112 4e-26
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 112 4e-26
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 1.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.1
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 4.1
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 5.4
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.4
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.4
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 9.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 112 bits (269), Expect = 4e-26
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
TG VYNVT ++GV++ K V G Y ++V
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91
Score = 97.1 bits (231), Expect = 1e-21
Identities = 46/74 (62%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAXHIV- 430
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP H V
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142
Query: 431 XGXXKPVLLVPIPY 472
+PV L P+ Y
Sbjct: 143 TENNEPVTLHPVAY 156
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 112 bits (269), Expect = 4e-26
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +3
Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
TG VYNVT ++GV++ K V G Y ++V
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91
Score = 96.7 bits (230), Expect = 2e-21
Identities = 46/74 (62%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAXHIV- 430
R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP H V
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142
Query: 431 XGXXKPVLLVPIPY 472
+PV L P+ Y
Sbjct: 143 TENNEPVTLHPVAY 156
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPXR*PLEFVIF 5
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 80 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 184
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 230 DCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
+C + CS + P I + K DF KR E +R+ +E A KTV L Q
Sbjct: 157 ECIRLCSL-VHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -3
Query: 418 SFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLNTDIDALRYNP 254
SF+G W+ L + + G L G LQ + +++SL EV ++ + L+ ++RY+
Sbjct: 455 SFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLSRAFGSIRYSG 513
Query: 253 PR 248
R
Sbjct: 514 GR 515
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 379 LAGSLGFLQ*PLILFDSLKEVLSALGV 299
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 203 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 75
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 288 SMSSTPSADKTSLRE 332
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -3
Query: 403 WLSLQVDGLAGSLGF 359
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 267 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLXT 425
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNIST 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,422
Number of Sequences: 5004
Number of extensions: 35965
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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