BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30451.Seq (534 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0290 + 2246791-2247027,2248089-2248346 113 6e-26 10_08_0310 - 16669565-16669822,16670558-16670794 111 5e-25 08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.4 01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.1 05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.1 02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.4 06_03_1007 + 26869731-26870429,26871262-26871387 27 7.2 03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 27 7.2 03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.2 01_06_1794 - 39919363-39920025 27 7.2 01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545... 27 7.2 12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497,421... 27 9.5 08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671... 27 9.5 06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.5 >03_01_0290 + 2246791-2247027,2248089-2248346 Length = 164 Score = 113 bits (273), Expect = 6e-26 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%) Frame = +3 Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188 M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+ Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60 Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338 TGRV+NVT A+GV +NK+V + R + V + + ++ LR+ K Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111 Score = 65.7 bits (153), Expect = 2e-11 Identities = 33/76 (43%), Positives = 48/76 (63%) Frame = +2 Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAXHIVX 433 RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142 Query: 434 GXXKPVLLVPIPYXFV 481 G + PIPY V Sbjct: 143 GATLET-VTPIPYDVV 157 >10_08_0310 - 16669565-16669822,16670558-16670794 Length = 164 Score = 111 bits (266), Expect = 5e-25 Identities = 50/86 (58%), Positives = 63/86 (73%) Frame = +3 Query: 9 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188 M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+ Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60 Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYR 266 TGRV+NVT A+GV +NK+V + R Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86 Score = 68.1 bits (159), Expect = 4e-12 Identities = 34/76 (44%), Positives = 49/76 (64%) Frame = +2 Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAXHIVX 433 RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142 Query: 434 GXXKPVLLVPIPYXFV 481 G + PIPY V Sbjct: 143 GATLET-VTPIPYDVV 157 >08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715, 2304824-2305096,2305454-2305558,2305635-2305851, 2306012-2306262,2306518-2306724,2307087-2307351, 2308655-2308749 Length = 580 Score = 29.1 bits (62), Expect = 2.4 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +2 Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 217 W H QW YAT+ I W+ R+ V D S Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568 >01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990, 1425183-1425252,1425356-1425495,1425620-1425679, 1425776-1425931,1426272-1426541 Length = 1056 Score = 28.7 bits (61), Expect = 3.1 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +3 Query: 108 YKVGDIVDIRGNGAVQKGMPHKVY 179 ++ GDI+ I G+G+V K PH++Y Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646 >05_03_0549 - 15349259-15349346,15349466-15349585,15349899-15350020, 15350511-15350783,15351398-15351502,15351588-15351804, 15352031-15352281,15352582-15352776,15352881-15353139, 15354617-15354714 Length = 575 Score = 28.3 bits (60), Expect = 4.1 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +2 Query: 116 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 211 W H H QW YA++ W+ R V D Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561 >02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 Length = 99 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +2 Query: 293 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400 ++ +KCRQD++ VK++ +L+++ A K KRQ Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34 >06_03_1007 + 26869731-26870429,26871262-26871387 Length = 274 Score = 27.5 bits (58), Expect = 7.2 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = +3 Query: 207 VTAHALGVIVNKRVRGGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 383 V A A+ V+ + G Y S + + S S +AD + RG R+PR ARP Sbjct: 49 VAAGAVVVVEVEEEEG--YESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105 >03_06_0284 + 32836171-32836377,32836466-32836568,32836681-32836757, 32836846-32837037,32837144-32837263,32837350-32837412, 32837537-32837671,32837827-32837991,32838104-32838181, 32840303-32840389,32840548-32840619,32840925-32840951, 32842292-32842390,32843143-32843213,32843710-32843838, 32843936-32844012,32844186-32844226,32844319-32844393, 32844525-32844673,32844766-32844870,32844948-32845023, 32845465-32845541,32845761-32846529 Length = 997 Score = 27.5 bits (58), Expect = 7.2 Identities = 21/83 (25%), Positives = 35/83 (42%) Frame = +2 Query: 260 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAXHIVXGX 439 + R + + + + +D E ERL KE +A G+T+ K + + I G Sbjct: 106 VAPRAKMNQQRSRRFRAAKDAADAAAEEERLRKEFEAEGRTLVAKEKSEAIDSNVITPG- 164 Query: 440 XKPVLLVPIPYXFVA*SPLKYFI 508 P+ FV S L+Y+I Sbjct: 165 --------TPFMFVLSSALQYYI 179 >03_06_0140 + 31951569-31951710,31951943-31952037,31952141-31953982, 31954065-31954179,31954260-31954897 Length = 943 Score = 27.5 bits (58), Expect = 7.2 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +3 Query: 258 LYRSASISVLSMSSTPSADKTSLRESKRM 344 +Y+SA++ V + SS P+ADK + + ++M Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438 >01_06_1794 - 39919363-39920025 Length = 220 Score = 27.5 bits (58), Expect = 7.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 329 RVKENERLLKEAKAAGKTVNLKRQPAPP 412 R ++ ++ EA AAG + KRQP PP Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPP 54 >01_03_0243 + 14154122-14154190,14154373-14154415,14154491-14154552, 14155214-14155310,14157663-14157733,14158338-14158694 Length = 232 Score = 27.5 bits (58), Expect = 7.2 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -1 Query: 321 KSCLHLECLTCSTRILMRFGIILREHAC--*QSHREHEQSRCTRD 193 ++C H ECL C T ++R + RE C ++R +++ C +D Sbjct: 176 RACSHCECLLCITHEIVRCD-LKREFFCTIWLAYRLQDEASCLQD 219 >12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497, 4216599-4216809,4217264-4217466,4217557-4217633, 4217874-4217949,4218342-4218425 Length = 373 Score = 27.1 bits (57), Expect = 9.5 Identities = 21/54 (38%), Positives = 25/54 (46%) Frame = +3 Query: 135 RGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGGLYRSASISVLSMS 296 RG+GA+ PHK Y K + HA G IV GGL AS + L S Sbjct: 287 RGDGAIYLRFPHKGYREK------IWDHAAGSIVVTEA-GGLVTDASGNDLDFS 333 >08_02_1157 + 24765719-24766544,24766569-24766637,24767031-24767180, 24767296-24768503 Length = 750 Score = 27.1 bits (57), Expect = 9.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 164 ATQSIPWKDRSRVQRDCSCSRCDCQQACSRRIIPKRI 274 + QS+PWK+R R+ + + S A S II + I Sbjct: 512 SAQSVPWKERLRIALEIARSLAYLHSAASVSIIHRDI 548 >06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-479179, 479263-479354,479788-479866,479971-480104,480184-480523 Length = 362 Score = 27.1 bits (57), Expect = 9.5 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +3 Query: 63 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 227 F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,114,611 Number of Sequences: 37544 Number of extensions: 262328 Number of successful extensions: 824 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 824 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1190246000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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