Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30451.Seq
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      136   1e-32
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.8  
SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)        29   2.4  
SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06)              29   3.2  
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    29   3.2  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    28   4.2  
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          28   5.5  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.5  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.3  
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    27   7.3  
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)               27   7.3  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  136 bits (329), Expect = 1e-32
 Identities = 60/82 (73%), Positives = 71/82 (86%)
 Frame = +3

Query: 9   MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           MTN+KGYR GTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 189 TGRVYNVTAHALGVIVNKRVRG 254
           TGRVYNVT  ALGV+VNK+V+G
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKG 504


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 23  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 23  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 23  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 23  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 266 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 382
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)
          Length = 314

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +3

Query: 165 PHKVYHGKTGRV------YNVTAHALGVIVNKRVRGGLYRSASI 278
           P KV   K GRV      YN+T    G++   ++RG +Y + S+
Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEMYINESL 247


>SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06)
          Length = 106

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 210 TAHALGVIVNKRVRGGLYRSASISVLSMSSTPS 308
           T H+  V+V    RGGL++  +ISV  +S  PS
Sbjct: 72  TKHSFNVVVRATDRGGLFKEMTISV-HLSGCPS 103


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 206 RDCSCSRCDCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 352
           RDC+CS+C       +R+   R+ I  +  K ++ R+ + +R  EN RL
Sbjct: 44  RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 182 WKDRSRVQRDCSCSRCDCQQACSR--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 355
           WK++  ++ +     C  Q+      + +P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 320 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAXHIVXGXXKPVLLVPIP 469
           F+KR +  +R L+E   A   +NL ++PA P K    +    KPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 241
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 122  HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDCQQACSRRIIPKRINI 280
            HC RH ++   +   AT+ +PW  KD S   R C  + C C       +   R++I
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFCVNEYGVYMSASRVDI 1330


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 383 VNLKRQPAPPKAXHIVXGXXKPVLLVPIPY 472
           VN  +   PP A + +    +PVL +P+P+
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPW 159


>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
          Length = 218

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +2

Query: 77  NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAC 247
           N  A+ + ESV+SWR     R++   +  + +  P    DRS +V       RCD Q   
Sbjct: 85  NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143

Query: 248 SRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 361
             R +P+ +   V  +  S+ R+  +  V    R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 171  KVYHGKTGRVYNVT-AHALGVIVNKRVR-GGLYRSASISVLSMSSTPSADKTSLRESKRM 344
            ++ HG +    +V  AH +  +   R R  GL  + +  +   SSTPS++K S    K  
Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950

Query: 345  RGY*RKPRL 371
                R  R+
Sbjct: 1951 EKSIRSSRI 1959


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 288 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST 389
           ++S+ PS  KT+   ++R     RKP +PAR ST
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMST 666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,770
Number of Sequences: 59808
Number of extensions: 312114
Number of successful extensions: 925
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)