Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30446.Seq
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    28   8.7  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    28   8.7  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    28   8.7  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    28   8.7  

>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 561 LYTPAVPTTSRPSARWYSVPALTTFF 484
           L  P  PTT + S+ W S  ++ TFF
Sbjct: 91  LTIPLTPTTQKQSSSWCSFESIKTFF 116


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 561 LYTPAVPTTSRPSARWYSVPALTTFF 484
           L  P  PTT + S+ W S  ++ TFF
Sbjct: 20  LTIPLTPTTQKQSSSWCSFESIKTFF 45


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 561 LYTPAVPTTSRPSARWYSVPALTTFF 484
           L  P  PTT + S+ W S  ++ TFF
Sbjct: 20  LTIPLTPTTQKQSSSWCSFESIKTFF 45


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 561 LYTPAVPTTSRPSARWYSVPALTTFF 484
           L  P  PTT + S+ W S  ++ TFF
Sbjct: 91  LTIPLTPTTQKQSSSWCSFESIKTFF 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,801
Number of Sequences: 27780
Number of extensions: 110246
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)