Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30445.Seq
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   6.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   6.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.3  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 315 TNLKTWVIQTRRSLKKK 365
           T + TW    RR LKK+
Sbjct: 129 TQVSTWFANARRRLKKE 145


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 610 YARPSEFVKALRCHSSTLRHVC 545
           YARPS     LR HS    + C
Sbjct: 3   YARPSTLKTHLRTHSGEKPYRC 24


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 610 YARPSEFVKALRCHSSTLRHVC 545
           YARPS     LR HS    + C
Sbjct: 259 YARPSTLKTHLRTHSGEKPYRC 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,440
Number of Sequences: 336
Number of extensions: 3797
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)